PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4WHY

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	11	AASGFTFSDSYLA	BBBLBBAAABBBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	17	SITNSGGRFY	BBBAALABBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	9	TRMDY	BAEAB
G	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	6	RDNAKSTL	BBAAALBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	6	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	10	YSVSNLES	BLEABBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	10	MQTTHAPT	BBAABBBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	13	AASGFTFSDSYLA	BBBLBBAAABBBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBAAELBBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	10	TRMDY	BAEAB
I	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	5	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	6	YSVSNLES	BLLABBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	10	MQTTHAPT	BBAABBBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	9	GSETDF	EBAABB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	11	AASGFTFSDSYLA	BBBLBBAAABBBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-*	-1	SITNSGGRFY	BBBABAABBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	11	TRMDY	BAEAB
K	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	12	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	5	YSVSNLES	BLLABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	9	MQTTHAPT	BBAABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	84.6	H1	13	H1-13-1	10	AASGFTFSDSYLA	BBBLBBAAABBBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H2	10	H2-10-2	19	SITNSGGRFY	BBBAALABBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	50.0	H3	5	H3-5-2	12	TRMDY	BAEAB
M	heavy	Rattus.norvegicus	Ra_IGHV5-20*01	95.9	Ra_IGHV5-20*01	87.5	H4	8	H4-8-1	3	RDNAKSTL	BBAAALBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLlesdgNTYLN	BBABBABBAALBBBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75.0	L2	8	L2-8-1	5	YSVSNLES	BLLABBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	71.4	L3	8	L3-8-3	9	MQTTHAPT	BBAABBBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	83.3	L4	6	L4-6-3	8	GSETDF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022