PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JAN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	69.2	H1	13	H1-13-*	-1	TVSGGSMGGTYWS	BBBEEBABLBBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	55.6	H2	9	H2-9-1	17	YIFHTGETN	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	50.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFRN
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	75.0	H4	8	H4-8-1	17	VDTSEDQF	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	CDRLenMismatch	-1.0	L1	8	L1-8-1	17	SGASTNVC	BLBABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L2	8	L2-8-1	13	FENYKRPS	BLEABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L3	10	L3-10-3	15	QVWDSFSTFV	BBBBAAAEBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	66.7	L4	6	L4-6-2	12	KSGSTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	69.2	H1	13	H1-13-*	-1	TVSGGSMGGTYWS	BBBLEBABLBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	55.6	H2	9	H2-9-1	13	YIFHTGETN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	50.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFRN
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	75.0	H4	8	H4-8-1	12	VDTSEDQF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	CDRLenMismatch	-1.0	L1	8	L1-8-1	17	SGASTNVC	BLBABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L2	8	L2-8-1	13	FENYKRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L3	10	L3-10-3	20	QVWDSFSTFV	BBBBAAAEBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	66.7	L4	6	L4-6-2	26	KSGSTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022