PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JAM

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	69.2	H1	13	H1-13-*	-1	TVSGGsmGGTYWS
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	55.6	H2	9	H2-9-1	9	YIFHTGETN	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	50.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFRN
A	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	75.0	H4	8	H4-8-*	-1	VDTSEDQF	BBAALABB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	CDRLenMismatch	-1.0	L1	8	L1-8-1	13	SGASTNVC	BLBABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L2	8	L2-8-1	5	FENYKRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L3	10	L3-10-3	15	QVWDSFSTFV	BBBBAAAEBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	66.7	L4	6	L4-6-2	8	KSGSTA	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	69.2	H1	13	H1-13-*	-1	TVSGGSMGGTYWS	BBBEEBABLBBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	55.6	H2	9	H2-9-1	7	YIFHTGETN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	50.0	H3	15	H3-15-*	-1	ASLPRgQLVNAYFRN
H	heavy	Homo.sapiens	Hu_IGHV4-59*11	82.2	Hu_IGHV4-59*11	75.0	H4	8	H4-8-1	14	VDTSEDQF	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	CDRLenMismatch	-1.0	L1	8	L1-8-1	14	SGASTNVC	BLBABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L2	8	L2-8-1	7	FENYKRPS	BLLABBBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	50.0	L3	10	L3-10-3	16	QVWDSFSTFV	BBBBAAAEBB
L	lambda	Homo.sapiens	Hu_IGLV3-1*01	86.4	Hu_IGLV3-1*01	66.7	L4	6	L4-6-2	7	KSGSTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022