PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3W9D

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	53.8	H1	13	H1-13-*	-1	TASGGTLRTYGVS	BBBLLAAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	40.0	H2	10	H2-10-*	-1	RTIPLFGKTD	BBBBBBLBBB
A	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	100.0	H3	15	H3-15-*	-1	ARDLTTlTSYNWWDL
A	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	62.5	H4	8	H4-8-*	-1	ADKSMDTS	BBAALABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	9	RASQSVTsSQLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	9	SGASNRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	8	L3-8-4	37	QQYGSSPT	BBABABBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	53.8	H1	13	H1-13-*	-1	TASGGTLRTYGVS	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	40.0	H2	10	H2-10-1	14	RTIPLFGKTD	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	100.0	H3	15	H3-15-*	-1	ARDLTTlTSYNWWDL
C	heavy	Homo.sapiens	Hu_IGHV1-69*17	87.7	Hu_IGHV1-69*17	62.5	H4	8	H4-8-*	-1	ADKSMDTS	BBAALABB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	83.3	L1	12	L1-12-*	-1	RASQSVTsSQLA	BBABBBEBELBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	75.0	L2	8	L2-8-1	9	SGASNRAT	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	8	L3-8-4	39	QQYGSSPT	BBABABBB
D	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022