PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1NJ9

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	71.4	L1	14	L1-14-1	10	RSSTGTITSdNYAN	BBAAEBBBAAALBB
A	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	50.0	L2	8	L2-8-*	-1	GVNNARPP	BLLABBBA
A	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	87.5	L3	9	L3-9-*	-1	ALWYSNHWV	BBBBBLBBB
A	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	83.3	L4	6	L4-6-*	-1	LTGDKA	BAAABB
B	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	100.0	H1	13	H1-13-1	11	KASGYSFTDYNMY	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	70.0	H2	10	H2-10-1	14	YIDPSNGDTF	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	100.0	H3	9	H3-9-2	30	ARGGGLFAF	BBBEABBAB
B	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	87.5	H4	8	H4-8-1	17	LDKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	100.0	H1	13	H1-13-1	9	KASGYSFTDYNMY	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	70.0	H2	10	H2-10-1	17	YIDPSNGDTF	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	100.0	H3	9	H3-9-*	-1	ARGGGLFAF	BBBEAEBAB
H	heavy	Mus.musculus	Mo_IGHV1S135*01	90.4	Mo_IGHV1S135*01	87.5	H4	8	H4-8-1	13	LDKSSSTA	BBAAALBB
L	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	71.4	L1	14	L1-14-1	9	RSSTGTITSdNYAN	BBAAEBBBAAALBB
L	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	50.0	L2	8	L2-8-*	-1	GVNNARPP	BLLABABA
L	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	87.5	L3	9	L3-9-*	-1	ALWYSNHWV	BBBBBLBBB
L	lambda	Mus.musculus	Mo_IGLV1*02	95.6	Mo_IGLV1*02	83.3	L4	6	L4-6-*	-1	LTGDKA	BAEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022