PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1NAK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	92.3	H1	13	H1-13-1	18	SVTGVSITSGYWN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	77.8	H2	9	H2-9-1	13	YISKSGSAY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	50.0	H3	7	H3-7-1	19	AIDDFDI	BBAALAB
H	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	87.5	H4	8	H4-8-1	11	RDTSKNQF	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	92.3	H1	13	H1-13-1	17	SVTGVSITSGYWN	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	77.8	H2	9	H2-9-1	14	YISKSGSAY	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	50.0	H3	7	H3-7-1	19	AIDDFDI	BBAALAB
I	heavy	Mus.musculus	Mo_IGHV3-8*02	94.5	Mo_IGHV3-8*02	87.5	H4	8	H4-8-1	11	RDTSKNQF	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	87.5	L1	16	L1-16-*	-1	RSSQSLghssgNTYLH	BBABBAEBALAABBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	9	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	57.1	L3	9	L3-9-cis7-1	9	FQTTHDPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	24	GSGTDF	BEEABB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	87.5	L1	16	L1-16-*	-1	RSSQSLghssgNTYLH	BBABBAEBALAABBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	57.1	L3	9	L3-9-cis7-1	8	FQTTHDPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	94.2	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	25	GSGTDF	BEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022