PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1DVF

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	12	RASGNIHNYLA	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	62.5	L2	8	L2-8-1	9	YYTTTLAD	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	11	QHFWSTPRT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV12-41*01	97.1	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	11	GSGTQY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV2-6-7*01	97.3	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	19	TVSGFSLTGYGVN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV2-6-7*01	97.3	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	6	MIWGDGNTD	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV2-6-7*01	97.3	Mo_IGHV2-6-7*01	100.0	H3	10	H3-10-1	10	ARERDYRLDY	BBBBLLBBAB
B	heavy	Mus.musculus	Mo_IGHV2-6-7*01	97.3	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	11	KDNSKSQV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	95.7	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	7	RASQDISNYLN	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	95.7	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	9	YYTSRLHS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	95.7	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	8	QQGNTLPWT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	95.7	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	11	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	84.6	H1	13	H1-13-1	17	TASGFNIKDTHMN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	80.0	H2	10	H2-10-1	11	RIDPANGNIQ	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	50.0	H3	15	H3-15-*	-1	ATKVIYyQGRGAMDY
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	9	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022