PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1DQM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3S1*01	97.3	Mo_IGHV3S1*01	84.6	H1	13	H1-13-1	21	SVTGDSVTSDYWS	BBBLEBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	97.3	Mo_IGHV3S1*01	100.0	H2	9	H2-9-1	13	YISYSGSTY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	97.3	Mo_IGHV3S1*01	50.0	H3	7	H3-7-1	11	ASWGGDV	BBAALAB
H	heavy	Mus.musculus	Mo_IGHV3S1*01	97.3	Mo_IGHV3S1*01	100.0	H4	8	H4-8-1	15	RDTSKNQY	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	100.0	Mo_IGKV5-43*01	100.0	L1	11	L1-11-1	6	RASQSISNNLH	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	100.0	Mo_IGKV5-43*01	100.0	L2	8	L2-8-1	22	KYASQSIS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	100.0	Mo_IGKV5-43*01	100.0	L3	9	L3-9-cis7-1	14	QQSNSWPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV5-43*01	100.0	Mo_IGKV5-43*01	100.0	L4	6	L4-6-1	10	GSGTDF	EEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022