PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1CIC

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV6-23*01	100.0	Mo_IGKV6-23*01	81.8	L1	11	L1-11-1	10	KASQDVRIAVA	BBABBAEABBB
A	kappa	Mus.musculus	Mo_IGKV6-23*01	100.0	Mo_IGKV6-23*01	100.0	L2	8	L2-8-1	14	YWASTRHT	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV6-23*01	100.0	Mo_IGKV6-23*01	57.1	L3	9	L3-9-cis7-1	12	QHCGSYPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV6-23*01	100.0	Mo_IGKV6-23*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S22*01	94.3	Mo_IGHV1S22*01	92.3	H1	13	H1-13-1	10	KASGYTFTNYWMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S22*01	94.3	Mo_IGHV1S22*01	80.0	H2	10	H2-10-1	9	NIYPGSGDSN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S22*01	94.3	Mo_IGHV1S22*01	50.0	H3	10	H3-10-*	-1	ARGLAFYFDH	BBEBAABBAB
B	heavy	Mus.musculus	Mo_IGHV1S22*01	94.3	Mo_IGHV1S22*01	100.0	H4	8	H4-8-1	10	VDTSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	6	RASGNIHNYLA	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	62.5	L2	8	L2-8-1	7	YYTTTLAD	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L3	9	L3-9-cis7-1	17	QHFWSTPRT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV12-41*01	100.0	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	11	GSGTQY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	98.6	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	14	TVSGFSLTGYGVN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	98.6	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	9	MIWGDGNTD	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	98.6	Mo_IGHV2-6-7*01	100.0	H3	10	H3-10-1	11	ARERDYRLDY	BBBBLLBBAB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	98.6	Mo_IGHV2-6-7*01	100.0	H4	8	H4-8-1	10	KDNSKSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022