PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1BVK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	11	RASGNIHNYLA	BBABBALLBBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Mo_IGKV12-41*01	62.5	L2	8	L2-8-1	11	YYTTTLAD	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	28.6	L3	9	L3-9-cis7-2	12	QHFWSTPRT	BBABEBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	83.3	L4	6	L4-6-1	14	GSGTDY	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	18	TVSGFSLTGYGVN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	14	MIWGDGNTD	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Hu_IGHV4-59*04	100.0	H3	10	H3-10-1	18	ARERDYRLDY	BBBBLLBBAB
B	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Hu_IGHV4-59*04	87.5	H4	8	H4-8-1	17	KDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	11	RASGNIHNYLA	BBABBALLBBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Mo_IGKV12-41*01	62.5	L2	8	L2-8-1	20	YYTTTLAD	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	28.6	L3	9	L3-9-cis7-2	12	QHFWSTPRT	BBABEBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	83.3	L4	6	L4-6-1	18	GSGTDY	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	17	TVSGFSLTGYGVN	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Mo_IGHV2-6-7*01	88.9	H2	9	H2-9-1	15	MIWGDGNTD	BBBAALBBB
E	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Hu_IGHV4-59*04	100.0	H3	10	H3-10-1	11	ARERDYRLDY	BBBBLLBBAB
E	heavy	Homo.sapiens	Hu_IGHV4-59*04	87.7	Hu_IGHV4-59*04	87.5	H4	8	H4-8-1	18	KDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022