PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6N1V

#CDRs = 6; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
1	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	78.6	H1	14	H1-14-1	39	GVSGGSISDAYYWS	PBBLBPAAPPBPBB
1	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	60	H2	10	H2-10-1	17	YIFGSNGGTR	BBPAAALPBB
1	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREGVPTEATTGDH	BBAGPPBADPAGPB
2	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	69.2	L1	13	L1-13-1	16	TGTNSNIGVNYVQ	BBBAADAADBPBB
2	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	87.5	L2	8	L2-8-1	17	YENYKRPS	BLLDBBPP
2	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV	-1	L3	11	L3-11-1	17	QSYDISLGAHV	BBBBAAALBPB
3	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	78.6	H1	14	H1-14-1	39	GVSGGSISDAYYWS	PBBLBPAAPPBPBB
3	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	60	H2	10	H2-10-1	17	YIFGSNGGTR	BBPAAALPBB
3	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREGVPTEATTGDH	BBAGPPBADPAGPB
4	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	69.2	L1	13	L1-13-1	16	TGTNSNIGVNYVQ	BBBAADAADBPBB
4	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	87.5	L2	8	L2-8-1	17	YENYKRPS	BLLDBBPP
4	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV	-1	L3	11	L3-11-1	17	QSYDISLGAHV	BBBBAAALBPB
H	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	78.6	H1	14	H1-14-1	39	GVSGGSISDAYYWS	PBBLBPAAPPBPBB
H	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV4S7*01	60	H2	10	H2-10-1	17	YIFGSNGGTR	BBPAAALPBB
H	heavy	Macaca.mulatta	Mf_IGHV4S7*01	90.4	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREGVPTEATTGDH	BBAGPPBADPAGPB
L	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	69.2	L1	13	L1-13-1	16	TGTNSNIGVNYVQ	BBBAADAADBPBB
L	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV1-7*01	87.5	L2	8	L2-8-1	17	YENYKRPS	BLLDBBPP
L	lambda	Macaca.mulatta	Ma_IGLV1-7*01	92.7	Ma_IGLV	-1	L3	11	L3-11-1	17	QSYDISLGAHV	BBBBAAALBPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BBBBBBBBBDBPAAALPBBBBBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	23	YNNNDRPS	APADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBPAADBPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDBAAPPDAPPAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLPPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	17	YDTSRRAS	BLLDPBPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPPAP
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
X	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BBBBBBBBBDBPAAALPBBBBBBPAB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPDP
Y	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BBBBBBBBBDBPAAALPBBBBBBPAB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	23	YNNNDRPS	APADBBPP
Z	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADPPPPAB
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBBB
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	23	YNNNDRPS	APADBBPP
a	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBBADPPPPAB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBPAADBPBB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
f	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDBAAPPDAPPAP
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBPAADBPBB
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
g	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDBAAPPDAPPAP
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLPPBB
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	17	YDTSRRAS	BLLDPBPP
h	kappa	Macaca.mulatta	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPPAP
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLPPBB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	17	YDTSRRAS	BLLDPBPP
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BPPAP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019