PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6MPG

#CDRs = 6; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV3-9*01	100	H1	13	H1-13-1	24	AASGFTFSDYYMD	PBBLBBAADBPBB
3	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	CDRLenMismatch	-1	H2	9	H2-9-1	24	RISNSGITW	BBPADLBPB
3	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV	-1	H3	11	H3-11-*	-1	TKESAAAIGHY	BBPPAABPLAB
4	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	94.1	L1	17	L1-17-1	20	KSSQSLLASSNNKNYLA	PBABPAPPAAALBBBBB
4	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	100	L2	8	L2-8-1	14	YWASTRES	BLLDPPPP
4	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYYTTPLT	BPDABPpPB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	36	NVSGTLVRDNYWS	PBBGPPAAAPPBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPBP
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBBDBPAAALPBBBPBBBAP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPPBPB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DBADBBPP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPAAPPPPAP
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDPPPP
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAAAPPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPAPADPPAAPPAP
B	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	94.1	L1	17	L1-17-1	20	KSSQSLLASSNNKNYLA	PBABPAPPAAALBBBBB
B	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	100	L2	8	L2-8-1	14	YWASTRES	BLLDPPPP
B	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYYTTPLT	BPDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	36	NVSGTLVRDNYWS	PBBGPPAAAPPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPBP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBBDBPAAALPBBBPBBBAP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPPBPB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DBADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPAAPPPPAP
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAAAPPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPADPPAAPPAP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDPPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADB
W	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV3-9*01	100	H1	13	H1-13-1	24	AASGFTFSDYYMD	PBBLBBAADBPBB
W	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	CDRLenMismatch	-1	H2	9	H2-9-1	24	RISNSGITW	BBPADLBPB
W	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV	-1	H3	11	H3-11-*	-1	TKESAAAIGHY	BBPPAABPLAB
X	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV3-9*01	100	H1	13	H1-13-1	24	AASGFTFSDYYMD	PBBLBBAADBPBB
X	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	CDRLenMismatch	-1	H2	9	H2-9-1	24	RISNSGITW	BBPADLBPB
X	heavy	Macaca.mulatta	Ma_IGHV3-9*01	94.5	Ma_IGHV	-1	H3	11	H3-11-*	-1	TKESAAAIGHY	BBPPAABPLAB
Y	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	94.1	L1	17	L1-17-1	20	KSSQSLLASSNNKNYLA	PBABPAPPAAALBBBBB
Y	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV4-3*01	100	L2	8	L2-8-1	14	YWASTRES	BLLDPPPP
Y	kappa	Macaca.mulatta	Ma_IGKV4-3*01	97.1	Ma_IGKV	-1	L3	9	L3-9-cis7-1	14	QQYYTTPLT	BPDABPpPB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	36	NVSGTLVRDNYWS	PBBGPPAAAPPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	38	YVHDSGDTN	BBBPLLPBP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBBBDBPAAALPBBBPBBBAP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPPBPB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	24	YNNNDRPS	DBADBBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	76.9	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPAAPPPPAP
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PBBLBPAAAPPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	15	WIKPLWGAVS	BBPAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPADPPAAPPAP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPABPLBPBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDPPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019