PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6CUF

#CDRs = 6; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	18	KASGYTFTDYEIH	PPBLBPAADBPBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70	H2	10	H2-10-1	13	AIVPKTGYTA	BBPAADLPBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBPLBBPDB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	15	RSSQSIVYSDGNTYLE	BPABPDPPAALPPPBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	100	L2	8	L2-8-1	36	YKVSNRFS	BLAAPBPP
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGSHVPYT	BPDDBPpPB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-3	39	YVHDSGDTN	BBBPLLPDP
5	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAADLPBBBPBBPAB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	22	YNNNDRPS	DBADBBPP
6	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	17	YDTSRRAS	BLLDPBPP
7	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	12	RASGYNFRDYSIH	PBBLBPAADBPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	13	WIKPLWGAVS	BBPAADLPBB
8	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	18	KASGYTFTDYEIH	PPBLBPAADBPPB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70	H2	10	H2-10-1	13	AIVPKTGYTA	BBPAADLPBB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBPLBPPAB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	15	RSSQSIVYSDGNTYLE	BPABPDPPAALPPPBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	100	L2	8	L2-8-1	37	YKVSNRFS	BLAAPBPP
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGSHVPYT	BPDDBPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	32	NVSGTLVRDNYWS	PBBGPPAAABPBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBPLLPDP
M	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBBPBDBPAADLPBBBPBBPAB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	23	YNNNDRPS	DBADBBPP
N	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPAAPPPPAB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	12	RASGYNFRDYSIH	PBBLBPAADBPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	12	WIKPLWGAVS	BBPAADLPBB
Q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDPPPP
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADP
h	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	92.3	H1	13	H1-13-1	19	KASGYTFTDYEIH	PPBLBPAADBPBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV1-15*01	70	H2	10	H2-10-1	14	AIVPKTGYTA	BBPAAALPBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	TRLRNYWYFDV	BBBBPLBPPAB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	15	RSSQSIVYSDGNTYLE	BPABPDPPAALPPPBB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV1-117*01	100	L2	8	L2-8-1	36	YKVSNRFS	BLAAPBPP
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94	Mo_IGKV	-1	L3	9	L3-9-cis7-1	18	FQGSHVPYT	BPDDBPpPB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	31	NVSGTLVRDNYWS	PBBGPPAAABPBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBPLLPDP
m	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBPBPPBDBPAADLPBBBPBBPAB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPDBPBBPB
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	22	YNNNDRPS	DBADBBPP
n	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPAAPPPPAB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	12	RASGYNFRDYSIH	PBBLBPAADBPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	13	WIKPLWGAVS	BBPAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPDPAAPPDAPPAB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BBABPLBPBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV4-55*01	75	L2	8	L2-8-1	16	YDTSRRAS	BLLDPPPP
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBADB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019