PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 5MV3

#CDRs = 6; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	19	AASGFTFSDAWMD	PBBLBPAAAPPBB
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	12	EIRNKVNNHATN	BBPPAADLLPBB
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	10	RASESVDNYGISSMN	BPABPDPBLLBPPBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	13	YAASKQGS	BLGDPBPP
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	12	QQSKGVPYT	BBDAPPpPB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	19	AASGFTFSDAWMD	PBBLBPAAAPPBB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	13	EIRNKVNNHATN	BBPPAADLLPBB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	10	RASESVDNYGISSMN	BPABPDPBLLBPPBB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	15	YAASKQGS	BLGDPBPP
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	11	QQSKGVPYT	BBDABBpPB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	18	AASGFTFSDAWMD	PBBLBPAAAPPBB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	13	EIRNKVNNHATN	BBPPAADLLPPB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	10	RASESVDNYGISSMN	BPABPDPBLLBBPBB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	18	YAASKQGS	BLGDPPPP
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	14	QQSKGVPYT	BBDABBpPB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	16	AASGFTFSDAWMD	PBBLBPAAAPPBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	11	EIRNKVNNHATN	BBPPAAALLPBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	14	RASESVDNYGISSMN	BBABPDPBLLPPPBB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	9	YAASKQGS	BLLDPPPP
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	8	QQSKGVPYT	BBDABPpPB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	20	AASGFTFSDAWMD	PBBLBPAAAPPBB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	13	EIRNKVNNHATN	BBPPAAALLPBB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	10	RASESVDNYGISSMN	BPABPDPBLLBPPBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	13	YAASKQGS	BLGDPBPP
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	9	QQSKGVPYT	BBDABPpPB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	18	AASGFTFSDAWMD	PBBLBPAAAPPBB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	12	EIRNKVNNHATN	BBPPAADLLPBB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	14	RASESVDNYGISSMN	BPABPDPBLLBPPBB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	15	YAASKQGS	BLGDPPPP
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	9	QQSKGVPYT	BBDABPpPB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	16	AASGFTFSDAWMD	PBBLBPAAAPPBB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	12	EIRNKVNNHATN	BBPPAAALLPBB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	13	RASESVDNYGISSMN	BPABPDPBLLBPPBB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	16	YAASKQGS	BLLDPPPP
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	5	QQSKGVPYT	BBDABPpPB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100	H1	13	H1-13-1	18	AASGFTFSDAWMD	PBBLBPAAAPBBB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	10	EIRNKVNNHATN	BBPPAAALLPBB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV	-1	H3	7	H3-7-*	-1	TGLTFDY	BBLGDAB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	12	RASESVDNYGISSMN	BPABPDPBLLBPPBB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	14	YAASKQGS	BLGDPPPP
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV	-1	L3	9	L3-9-cis7-1	12	QQSKGVPYT	BBDABBpPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019