PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 4WHT

#CDRs = 6; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	11	AASGFTFSDSYLA	PBBLBPAAAPPBB
A	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGGBBB
A	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPDPPAALPBPBB
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	6	YSVSNLES	BLGDPPPP
B	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
C	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	10	AASGFTFSDSYLA	PBBLBPAAABPBB
C	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGLBBB
C	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	8	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
D	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
E	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	10	AASGFTFSDSYLA	PBBLBPAAAPPBB
E	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	13	SITNSGGRFY	BBPAALABBB
E	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	8	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	6	YSVSNLES	BLGDPPPP
F	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
G	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	11	AASGFTFSDSYLA	PBBLBPAAABPBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	10	SITNSGGRFY	BBPADLABBB
G	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPDPPAALPBPBB
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
H	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
I	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	10	AASGFTFSDSYLA	PBBLBPAAAPPBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	11	SITNSGGRFY	BBPADLABBB
I	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPDPPAALPBPBB
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
J	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
K	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	14	AASGFTFSDSYLA	BBBLBPAAAPPBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	11	SITNSGGRFY	BBPADLABBB
K	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	21	TRMDY	BDGAB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	8	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
L	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
M	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	12	AASGFTFSDSYLA	PBBLBPAAAPPBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGGBBB
M	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	8	RSSQSLLESDGNTYLN	BPABPDPPAALPBPBB
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
N	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
O	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	11	AASGFTFSDSYLA	PBBLBPAAAPPBB
O	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGLBBB
O	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
P	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	12	AASGFTFSDSYLA	PBBLBPAAAPPBB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	37	SITNSGGRFY	BBPADGLBBB
Q	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPDPPAALPBPBB
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
R	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
S	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	10	AASGFTFSDSYLA	PBBLBPAAAPPBB
S	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGGBBB
S	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	21	TRMDY	BDGAB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
T	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
U	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	11	AASGFTFSDSYLA	PBBLBPAAAPPBB
U	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGGBBB
U	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	20	TRMDY	BDGAB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	7	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	7	YSVSNLES	BLGDPPPP
V	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB
X	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	76.9	H1	13	H1-13-1	10	AASGFTFSDSYLA	PBBLBPAAAPPBB
X	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV5-25*01	50	H2	10	H2-10-2	38	SITNSGGRFY	BBPADGGBBB
X	heavy	Rattus.norvegicus	Ra_IGHV5-25*01	95.9	Ra_IGHV	-1	H3	5	H3-5-2	21	TRMDY	BDGAB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	87.5	L1	16	L1-16-1	8	RSSQSLLESDGNTYLN	BPABPAPPAALPBPBB
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV2S25*01	75	L2	8	L2-8-1	6	YSVSNLES	BLGDPPPP
Y	kappa	Rattus.norvegicus	Ra_IGKV2S25*01	94.2	Ra_IGKV	-1	L3	8	L3-8-*	-1	MQTTHAPT	BBDABPPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019