PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 2GFB

#CDRs = 6; #Clusters = 6.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	9	RASQEISGYLS	BBABPDLLPBB
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	7	YAASTLDS	BLLDPPPP
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	13	LQYASSPYT	BBDABABPB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAAABPBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	13	YISSGSSTIY	BBPAALABBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPAALPPBPBPA
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	8	RASQEISGYLS	BPABPDLLPBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	8	YAASTLDS	BLLDPPPP
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	13	LQYASSPYT	BBDABABPB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	10	AASGFTFSSFGMH	PPBLBPAAABPBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	14	YISSGSSTIY	BBPAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPAALPPBPBPA
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	7	RASQEISGYLS	BBABPDLLPBB
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	6	YAASTLDS	BLLDPPPP
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	14	LQYASSPYT	BPDABABPB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAADBPBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	12	YISSGSSTIY	BBPAALABBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPAALPPBPBPA
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	11	RASQEISGYLS	BBABPDLLPBB
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	8	YAASTLDS	BLLDPPPP
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	13	LQYASSPYT	BBDABABPB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAADBPBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	13	YISSGSSTIY	BBPAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPAALPPBPBPA
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	9	RASQEISGYLS	BPABPDLLPBB
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	8	YAASTLDS	BLLDPPPP
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	13	LQYASSPYT	BBDABABPB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAADBPBB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	12	YISSGSSTIY	BBPAALABBB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPADLPPBPBPA
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	10	RASQEISGYLS	BBABPDLLPBB
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	8	YAASTLDS	BLLDPPPP
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	12	LQYASSPYT	BBDABABPB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAADBPBB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	11	YISSGSSTIY	BBPAALABBB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPADLPPBPBPA
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	10	RASQEISGYLS	BBABPDLLPBB
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	9	YAASTLDS	BLLDPPPP
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	9	LQYASSPYT	BBDABABPB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	10	AASGFTFSSFGMH	PPBLBPAADBPBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	13	YISSGSSTIY	BBPAALABBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPADLPPBPBPA
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L1	11	L1-11-2	9	RASQEISGYLS	BPABPDLLPBB
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV9-124*01	100	L2	8	L2-8-1	9	YAASTLDS	BLLDPPPP
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100	Mo_IGKV	-1	L3	9	L3-9-2	12	LQYASSPYT	BBDABABPB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H1	13	H1-13-1	11	AASGFTFSSFGMH	PPBLBPAADBPBB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100	H2	10	H2-10-2	12	YISSGSSTIY	BBPAALABBB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV	-1	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BPAALPPBPBPA

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019