PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 6OT1

#CDRs = 6; #Clusters = 16.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	66.7	H1	15	H1-15-1	29	GVSGGTISSSHFYWS	PBBLBBAAPPLBBPB
A	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	50	H2	10	H2-10-1	23	GLYINDERIN	BBBAADLPPB
A	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREPVIAAAGTVDV	BBBPABAAABDBPB
C	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	CDRLenMismatch	-1	L1	16	L1-16-1	15	RSSQSLLHSNGHTYVH	BPABPDPBAALBPPBB
C	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV2S17*01	100	L2	8	L2-8-*	-1	YEVSNRAS	BLPLBPPA
C	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV	-1	L3	9	L3-9-cis7-1	15	EQTLQIPFT	BBDABBpPB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	33	NVSGTLVRDNYWS	PBBGPPAADBPBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBPLLPDP
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBPBPDBPAAALPBBBPBBBAB
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	66.7	H1	15	H1-15-1	29	GVSGGTISSSHFYWS	PBBLBBAAPPLBBPB
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	50	H2	10	H2-10-1	23	GLYINDERIN	BBBAADLPPB
H	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREPVIAAAGTVDV	BBBPABAAABDBPB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPABPBBPB
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	20	YNNNDRPS	DBADPBPP
I	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PPBLBPAADBPBB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	22	WIKPLWGAVS	BBPAADLPBB
J	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPPDLDBPAAPPAP
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBPLBPBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	24	YDTSRRAS	BLLDPBPP
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP
L	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	CDRLenMismatch	-1	L1	16	L1-16-1	15	RSSQSLLHSNGHTYVH	BPABPDPBAALBPPBB
L	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV2S17*01	100	L2	8	L2-8-*	-1	YEVSNRAS	BLPLBPPA
L	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV	-1	L3	9	L3-9-cis7-1	15	EQTLQIPFT	BBDABBpPB
M	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	66.7	H1	15	H1-15-1	29	GVSGGTISSSHFYWS	PBBLBBAAPPLBBPB
M	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	50	H2	10	H2-10-1	23	GLYINDERIN	BBBAADLPPB
M	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV	-1	H3	14	H3-14-*	-1	VREPVIAAAGTVDV	BBBPABAAABDBPB
N	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	CDRLenMismatch	-1	L1	16	L1-16-1	15	RSSQSLLHSNGHTYVH	BPABPDPBAALBPPBB
N	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV2S17*01	100	L2	8	L2-8-*	-1	YEVSNRAS	BLPLBPPA
N	kappa	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV	-1	L3	9	L3-9-cis7-1	15	EQTLQIPFT	BBDABBpPB
Q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	33	NVSGTLVRDNYWS	PBBGPPAADBPBB
Q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBPLLPDP
Q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBPBPDBPAAALPBBBPBBBAB
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPABPBBPB
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-5	20	YNNNDRPS	DBADPBPP
R	lambda	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
S	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	61.5	H1	13	H1-13-1	16	RASGYNFRDYSIH	PPBLBPAADBPBB
S	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV1-22*01	40	H2	10	H2-10-1	22	WIKPLWGAVS	BBPAADLPBB
S	heavy	Homo.sapiens	Hu_IGHV1-24*01	58.8	Mo_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPPDLDBPAAPPAP
T	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	30	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBPLBPBB
T	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV4-55*01	75	L2	8	L2-8-1	24	YDTSRRAS	BLLDPBPP
T	kappa	Homo.sapiens	Hu_IGKV3-20*01	77	Mo_IGKV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP
m	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	66.7	H1	13	H1-13-1	33	NVSGTLVRDNYWS	PBBGPPAADBPBB
m	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV4S12*01	50	H2	9	H2-9-*	-1	YVHDSGDTN	BBBPLLPDP
m	heavy	Macaca.mulatta	Mf_IGHV4S12*01	94.5	Mf_IGHV	-1	H3	26	H3-26-*	-1	ATTKHGRRIYGVVAFKEWFTYFYMDV	BPBBBBPBPDBPAAALPBBBPBBBAB
n	lambda	Macaca.mulatta	Ma_IGKV2S17*01	94.3	CDRLenMismatch	-1	L1	11	L1-11-*	-1	GEESLGSRSVI	GPPPABPBBPB
n	lambda	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV2S17*01	100	L2	8	L2-8-5	20	YNNNDRPS	DBADPBPP
n	lambda	Macaca.mulatta	Ma_IGKV2S17*01	94.3	Ma_IGKV	-1	L3	12	L3-12-*	-1	HIWDSRRPTNWV	BPBPADPPPPAB
q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	46.2	H1	13	H1-13-1	16	RASGYNFRDYSIH	PPBLBPAADBPBB
q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV4-59*01	55.6	H2	10	H2-10-1	22	WIKPLWGAVS	BBPAADLPBB
q	heavy	Homo.sapiens	Hu_IGHV4-59*01	79.5	Hu_IGHV	-1	H3	16	H3-16-*	-1	VRRGSCDYCGDFPWQY	BBPPPDLDBPAAPPAP
r	kappa	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	45.5	L1	10	L1-10-*	-1	KASQGGNAMT	BPDBPLBPBB
r	kappa	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV3-21*01	62.5	L2	8	L2-8-1	24	YDTSRRAS	BLLDPBPP
r	kappa	Homo.sapiens	Hu_IGLV3-21*01	79	Hu_IGLV	-1	L3	5	L3-5-*	-1	QQFEF	BBLDP

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019