PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDR Structures for L3-10-cis78-1

Summary info for L3-10-cis78-1
Loop	# of Structures	% of Loop Length	Median PDB	Consensus Sequence	# of Unique Seq	% of Unique Seq	Gene	Loop Conformation	Median Angle	Consensus Sequence Logo
L3-10-cis78-1	51	4.50	2K_3EYFC	QQRthWPPlT	21	6.12	kappa	BBAABBbbBB	7

Structures in cluster L3-10-cis78-1
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
L3-10-cis78-1	6O9IE	2.6	kappa	Homo.sapiens	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	SQSTHVpPFT	BBAABBbbBB	8
L3-10-cis78-1	1JGUL	1.8	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	6
L3-10-cis78-1	1JGVL	1.85	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	4
L3-10-cis78-1	4LQFL	2.3	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	85.7	SQSTHIpPWT	BBAABBbbBB	6
L3-10-cis78-1	4TRPL	1.25	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	7
L3-10-cis78-1	4TUJB	1.89	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	9
L3-10-cis78-1	4TUKL	1.6	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	6
L3-10-cis78-1	4TUJD	1.89	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	8
L3-10-cis78-1	4TULL	1.4	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	7
L3-10-cis78-1	4TUOB	1.55	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	9
L3-10-cis78-1	5DRWB	2.27	kappa	Homo.sapiens	Hu_IGKV2-30*02	98.6	Hu_IGKV2-30*02	100.0	MQGTHWpPYT	BBAABBbbBB	9
L3-10-cis78-1	4TUOD	1.55	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPLT	BBAABBbbBB	9
L3-10-cis78-1	5DRXB	2.104	kappa	Homo.sapiens	Hu_IGKV2-30*02	98.6	Hu_IGKV2-30*02	100.0	MQGTHWpPYT	BBAABBbbBB	9
L3-10-cis78-1	6KX0B	2.404	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPWT	BBAABBbbBB	18
L3-10-cis78-1	5DRXL	2.104	kappa	Homo.sapiens	Hu_IGKV2-30*02	98.6	Hu_IGKV2-30*02	100.0	MQGTHWpPYT	BBAABBbbBB	9
L3-10-cis78-1	6KX1B	1.773	kappa	Mus.musculus	Mo_IGKV1-110*01	100.0	Mo_IGKV1-110*01	100.0	SQSTHVpPWT	BBAABBbbBB	9
L3-10-cis78-1	7N0AA	3.1	kappa	Homo.sapiens	Hu_IGKV2-24*01	100.0	Hu_IGKV2-24*01	71.4	MQATHApPYT	BBAABBbbBB	15
L3-10-cis78-1	3EYFA	2.3	kappa	Homo.sapiens	Hu_IGKV3-11*01	95.7	Hu_IGKV3-11*01	85.7	QQRSMWpPVT	BBAABBbbBB	7
L3-10-cis78-1	3EYOA	2.5	kappa	Homo.sapiens	Hu_IGKV3-11*01	95.7	Hu_IGKV3-11*01	85.7	QQRSMWpPVT	BBAABBbbBB	12
L3-10-cis78-1	3EYFC	2.3	kappa	Homo.sapiens	Hu_IGKV3-11*01	95.7	Hu_IGKV3-11*01	85.7	QQRSMWpPVT	BBAABBbbBB	7
L3-10-cis78-1	3EYQC	2.4	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	QQRSNWpPIT	BBAABBbbBB	7
L3-10-cis78-1	3EYOC	2.5	kappa	Homo.sapiens	Hu_IGKV3-11*01	95.7	Hu_IGKV3-11*01	85.7	QQRSMWpPVT	BBAABBbbBB	7
L3-10-cis78-1	3F12A	2.95	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	QQRSNWpPWT	BBBABBbbBB	20
L3-10-cis78-1	3F12C	2.95	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	QQRSNWpPWT	BBAABBbbBB	14
L3-10-cis78-1	4HH9A	1.7	kappa	Homo.sapiens	Hu_IGKV3-11*01	94.2	Hu_IGKV3-11*01	85.7	QQRGNWpPIT	BBAABBbbBB	8
L3-10-cis78-1	4HHAA	1.6	kappa	Homo.sapiens	Hu_IGKV3-11*01	94.2	Hu_IGKV3-11*01	85.7	QQRGNWpPIT	BBAABBbbBB	8
L3-10-cis78-1	4HH9C	1.7	kappa	Homo.sapiens	Hu_IGKV3-11*01	94.2	Hu_IGKV3-11*01	85.7	QQRGNWpPIT	BBAABBbbBB	8
L3-10-cis78-1	4YWGM	2.998	kappa	Homo.sapiens	Hu_IGKV3D-15*03	89.9	Hu_IGKV3D-15*03	71.4	QQYKHWpPYT	BBBABBbbBB	15
L3-10-cis78-1	7JKML	1.78	kappa	Homo.sapiens	Hu_IGKV1-39*01	82.6	Hu_IGKV1-39*01	71.4	QQTYSNpPIT	BBAABBbbBB	13
L3-10-cis78-1	7WWLN	EM	kappa	Homo.sapiens	Hu_IGKV3-11*01	88.4	Hu_IGKV3-11*01	71.4	QQRIIWpPYT	BBAABBbbBB	11
L3-10-cis78-1	7XICL	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	QQYNNWpPYT	BBAABBbbBB	13
L3-10-cis78-1	7WWLL	EM	kappa	Homo.sapiens	Hu_IGKV3-11*01	88.4	Hu_IGKV3-11*01	71.4	QQRIIWpPYT	BBAABBbbBB	11
L3-10-cis78-1	7XICF	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	QQYNNWpPYT	BBAABBbbBB	13
L3-10-cis78-1	7WWLM	EM	kappa	Homo.sapiens	Hu_IGKV3-11*01	88.4	Hu_IGKV3-11*01	71.4	QQRIIWpPYT	BBAABBbbBB	11
L3-10-cis78-1	7XICI	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	QQYNNWpPYT	BBAABBbbBB	13
L3-10-cis78-1	5E8EA	1.9	kappa	Homo.sapiens	Hu_IGKV3D-20*02	94.2	Hu_IGKV3D-20*02	57.1	QQRRSWPpLT	BBAABBbbBB	11
L3-10-cis78-1	6HJPL	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	13
L3-10-cis78-1	6FG1D	2.03	kappa	Homo.sapiens	Hu_IGKV3-15*01	100.0	Hu_IGKV3-15*01	100.0	QQYNNWPpLT	BBAABBbbBB	10
L3-10-cis78-1	6HJQL	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	12
L3-10-cis78-1	6HKGB	1.87	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	7
L3-10-cis78-1	6HJPH	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	13
L3-10-cis78-1	6HJQH	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	12
L3-10-cis78-1	6HKGD	1.87	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	8
L3-10-cis78-1	6HJPJ	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	13
L3-10-cis78-1	6HJQJ	EM	kappa	Homo.sapiens	Hu_IGKV3-15*01	95.7	Hu_IGKV3-15*01	85.7	QQYSNWPpIT	BBAABBbbBB	12
L3-10-cis78-1	6UOEL	1.8	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	85.7	QQRSHWPpLT	BBAABBbbBB	7
L3-10-cis78-1	5JUEL	1.65	kappa	Mus.musculus	Mo_IGKV1-110*01	98.5	Mo_IGKV1-110*01	85.7	SQSTHIpPWT	BBAABBbbBB	6
L3-10-cis78-1	6NMSL	2.11	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	57.1	QQYYDRpPLT	BBAABBbbBB	6
L3-10-cis78-1	6NMSA	2.11	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.6	Hu_IGKV3-20*01	57.1	QQYYDRpPLT	BBAABBbbBB	7
L3-10-cis78-1	5TY6L	1.361	kappa	Homo.sapiens	Hu_IGKV1-39*01	94.2	Hu_IGKV1-39*01	71.4	QQSDSipALT	BBAABBbbBB	11
L3-10-cis78-1	4ZYKL	2	kappa	Homo.sapiens	Hu_IGKV1-33*01	89.9	Hu_IGKV1-33*01	100.0	QQYDNlpPLT	BBAABBbbBB	14

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022