Protein Common Interface Database

Clusters with M>=20,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)	1	64	332	68	411	13	1127	100	77	94
(Proteasome);(Proteasome)_(Pr_beta_C)	2	53	269	68	411	13	880	100	75	78
(Proteasome);(Proteasome)_(Pr_beta_C)	3	51	316	68	411	13	1396	100	78	75
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	88	379	88	445	3	427	100	69	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	88	379	88	445	2	494	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	68	285	68	411	0	627	100	71	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	68	333	68	411	13	622	100	73	100
(C1-set);(MHC_I)_(C1-set)	1	425	866	426	884	10	1279	100	91	100
(C1-set);(MHC_I)_(C1-set)	2	35	64	426	884	18	349	0	6	8
(C1-set);(MHC_I)_(C1-set)	3	29	87	426	884	18	262	0	0	7
(C1-set);(MHC_I)_(C1-set)	5	27	73	426	884	19	262	0	1	6
(C1-set);(MHC_I)_(C1-set)	6	24	46	426	884	72	334	0	0	6
(C1-set);(MHC_I)_(C1-set)	4	28	39	426	884	36	269	3	8	7
(Thrombin_light);(Trypsin)	1	109	375	109	435	10	1160	100	97	100
(Thrombin_light);(Trypsin)	2	21	32	109	435	75	260	3	16	19
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	33	42	41	50	5	868	100	74	80
(Skp1_POZ);(ubiquitin)	1	20	58	20	59	10	1076	100	83	100
(Histone);(Histone)_(Histone_H2A_C)	1	85	215	85	227	12	2486	100	76	100
(Histone);(Histone)_(Histone_H2A_C)	2	77	197	85	227	40	667	99	74	91
(Histone);(TAF)	1	96	227	97	247	13	2448	100	76	99
(Histone);(TAF)	2	78	193	97	247	9	507	99	73	80
(Histone);(TAF)	3	77	201	97	247	65	264	99	73	79
(Histone)_(Histone_H2A_C);(TAF)	1	78	203	78	220	12	413	99	74	100
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	78	151	91	171	10	431	97	40	86
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	78	155	82	167	10	477	97	43	95
(V-set)_(C1-set);(V-set)_(DUF1968)	1	208	380	208	390	7	2044	100	86	100
(C1-set);(MHC_I_3)_(C1-set)	1	40	134	40	137	12	1251	100	78	100
(Pico_P1A);(Rhv)	1	58	137	63	148	10	999	100	61	92
(Pico_P1A);(Rhv)	2	54	134	63	148	0	782	100	56	86
(Pico_P1A);(Rhv)	3	47	114	63	148	10	521	100	55	75
(ubiquitin);(UQ_con)	1	31	37	48	46	1	646	95	46	65
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	35	166	37	183	10	1544	99	93	95
(COX1);(COX2_TM)_(COX2)	1	23	75	23	77	16	3564	100	71	100
(COX1);(COX3)	1	22	65	22	66	19	2494	100	68	100
(Photo_RC);(PRCH)_(PRC)	1	23	131	23	137	38	1618	100	97	100
(Photo_RC);(PRCH)_(PRC)	2	23	131	23	137	38	2677	100	98	100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	34	71	34	81	10	1604	100	83	100
(Cytochrom_C1);(UCR_14kD)	1	30	63	30	73	34	376	100	81	100
(Cytochrom_C1);(UCR_hinge)	1	30	63	30	73	3	1083	100	81	100
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	22	50	22	65	4	747	100	80	100
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	27	60	30	73	31	842	100	85	90
(Cytochrom_C1);(UcrQ)	1	30	64	30	73	21	726	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	30	63	30	73	26	380	100	81	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	30	64	30	73	34	1218	100	80	100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	22	51	22	65	49	486	100	78	100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	30	63	30	73	21	1004	100	81	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	26	46	30	73	21	381	87	74	87
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	22	51	22	65	26	877	100	78	100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	27	52	30	73	26	231	100	83	90
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	30	64	30	73	21	826	100	80	100
(UCR_14kD);(UcrQ)	1	27	60	30	73	21	459	100	85	90
(UCR_hinge);(UcrQ)	1	20	41	30	67	21	271	100	88	67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	22	51	22	65	31	639	100	78	100
(UCR_TM)_(Rieske);(UcrQ)	1	22	51	22	65	12	558	100	78	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	364	624	383	651	0	419	94	15	95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	368	635	383	648	0	772	94	15	96
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	58	58	384	129	4	141	98	14	15
(Ribosom_S12_S23);(Ribosomal_S17)	1	237	476	267	509	3	219	100	22	89
(Ribosomal_L13);(Ribosomal_L20)	1	269	433	280	439	0	522	100	17	96
(Ribosomal_L13);(Ribosomal_L21p)	1	32	129	279	159	39	102	100	9	11
(Ribosomal_L13);(Ribosomal_L3)	1	200	293	862	418	3	294	87	10	23
(Ribosomal_L14);(Ribosomal_L19)	1	270	436	277	440	0	801	100	15	97
(Ribosomal_L14);(Ribosomal_L3)	1	278	487	864	515	0	242	92	11	32
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	96	234	100	239	5	1094	100	10	96
(Ribosomal_L16);(Ribosomal_L27)	1	108	212	273	261	7	189	100	14	40
(Ribosomal_L17);(Ribosomal_L3)	1	95	130	274	288	26	112	100	24	35
(Ribosomal_L17);(Ribosomal_L3)	2	33	107	274	288	27	119	99	7	12
(Ribosomal_L17);(Ribosomal_L32p)	1	260	426	268	429	0	349	100	16	97
(Ribosomal_L19);(Ribosomal_L3)	1	268	434	278	439	0	712	100	16	96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	51	51	208	100	40	206	100	45	25
(Ribosomal_L20);(Ribosomal_L21p)	1	270	437	275	440	0	969	100	15	98
(Ribosomal_L21p);(Ribosomal_L27A)	1	94	128	279	241	40	163	100	21	34
(Ribosomal_L22);(Ribosomal_L32p)	1	269	436	280	439	0	468	100	17	96
(Ribosomal_L23);(Ribosomal_L29)	1	269	493	284	499	0	491	100	14	95
(Ribosomal_L27A);(Ribosomal_L35p)	1	264	427	271	433	0	781	100	16	97
(Ribosomal_L27A);(Ribosomal_L4)	1	271	429	296	442	0	464	100	17	92
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	163	293	188	315	0	262	100	14	87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	152	268	179	283	0	960	100	14	85
(Ribosomal_L31);(Ribosomal_S13)	1	98	207	168	238	0	401	100	16	58
(Ribosomal_L31);(Ribosomal_S19)	1	89	178	166	230	9	436	99	20	54
(Ribosomal_L31);(Ribosomal_S19)	2	21	23	166	230	5	388	100	0	13
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	176	275	318	380	1	289	98	12	55
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	32	52	318	380	6	334	96	2	10
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	29	43	317	43	56	265	40	5	9
(Ribosomal_S10);(Ribosomal_S14)	1	384	648	398	664	0	789	94	17	96
(Ribosomal_S10);(Ribosomal_S9)	1	63	161	398	317	5	187	98	12	16
(Ribosomal_S11);(Ribosomal_S18)	1	133	369	271	399	0	296	100	7	49
(Ribosomal_S11);(Ribosomal_S7)	1	219	449	410	498	2	240	99	19	53
(Ribosomal_S13);(Ribosomal_S19)	1	380	649	392	661	0	439	94	11	97
(Ribosomal_S14);(Ribosomal_S19)	1	129	156	388	167	10	316	99	20	33
(Ribosomal_S18);(Ribosomal_S6)	1	258	506	272	526	0	925	100	12	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	22	22	279	36	2	417	91	9	8
(Ribosomal_S2);(Ribosomal_S8)	1	93	313	269	331	41	260	100	8	35
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	294	557	338	594	0	331	94	19	87
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	31	80	259	199	28	366	5	0	12
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	386	649	400	666	0	571	94	16	96
(Ribosomal_S7);(Ribosomal_S9)	1	349	585	408	622	0	460	93	13	86
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	111	205	112	228	0	582	100	52	99
(DNA_RNApol_7kD);(RNA_pol_N)	1	37	38	119	120	40	176	100	45	31
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	16	997	99	53	99
(RNA_pol_A_bac);(RNA_pol_L_2)	1	111	207	112	228	4	2026	100	61	99
(RNA_pol_A_bac);(RNA_pol_N)	1	111	205	112	228	3	1113	100	69	99
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	177	85	200	21	1695	99	71	99
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	187	92	208	22	433	99	63	99
(RNA_pol_L_2);(RNA_pol_Rpb8)	1	31	117	112	160	57	194	99	55	28
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	84	180	85	200	26	1310	99	58	99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	91	189	92	208	37	1536	99	71	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	117	164	118	165	10	1628	99	62	99
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	28	67	84	99	45	275	99	43	33
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	56	146	70	174	49	357	99	63	80
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	166	70	185	35	960	99	49	99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	70	166	70	186	44	1545	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	70	167	70	186	54	9191	99	60	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	24	59	62	99	51	217	98	42	39
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	70	167	70	186	4	2107	99	69	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	69	164	70	186	4	1902	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	69	166	70	186	29	1482	99	68	99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	60	105	62	119	5	596	99	47	97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)	1	20	21	69	91	17	250	100	38	29
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	72	117	73	131	2	2058	99	48	99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	67	110	69	127	4	440	98	44	97
(Synaptobrevin);(Syntaxin)_(SNARE)	1	25	29	25	30	4	1398	100	72	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	119	133	127	135	8	493	71	6	94
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	119	133	119	133	0	881	71	6	100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	131	145	138	145	2	460	72	9	95
(Ribosom_S12_S23);(Ribosomal_S30)	1	105	119	111	119	10	458	68	8	95
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	43	43	134	50	32	361	79	0	32
(Ribosomal_L7Ae);(S10_plectin)	1	25	25	119	30	3	292	72	0	21
(Ribosomal_S11);(Ribosomal_S26e)	1	117	131	117	131	10	1108	70	7	100
(Ribosomal_S11);(Ribosomal_S28e)	1	50	50	136	61	4	291	94	4	37
(Ribosomal_S11);(Ribosomal_S3Ae)	1	130	144	133	146	5	861	74	8	98
(Ribosomal_S13);(Ribosomal_S19e)	1	127	141	132	141	2	433	72	8	96
(Ribosomal_S13);(Ribosomal_S25)	1	122	136	126	138	0	462	71	7	97
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	22	22	137	23	35	244	77	9	16
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	133	147	133	147	0	707	73	7	100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	60	60	130	70	27	199	95	8	46
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	114	128	137	130	10	194	70	8	83
(Ribosomal_S14);(S10_plectin)	1	113	127	119	129	0	290	70	6	95
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	133	147	135	147	5	716	73	9	99
(Ribosomal_S17e);(Ribosomal_S3Ae)	1	27	27	128	29	4	220	100	7	21
(Ribosomal_S19e);(Ribosomal_S9)	1	112	125	132	129	28	228	71	8	85
(Ribosomal_S21e);(Ribosomal_S27e)	1	95	109	126	111	10	360	68	8	75
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	124	138	126	138	2	1315	72	8	98
(Ribosomal_S21e);(Ribosomal_S8)	1	120	134	126	134	0	263	72	8	95
(Ribosomal_S24e);(Ribosomal_S4)_(S4)	1	68	82	80	83	8	229	61	7	85
(Ribosomal_S25);(Ribosomal_S7)	1	125	139	126	139	4	597	71	7	99
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	114	128	117	131	10	256	71	6	97
(Ribosomal_S27e);(Ribosomal_S7e)	1	90	104	127	110	29	226	69	9	71
(Ribosomal_S27e);(Ribosomal_S8)	1	129	143	133	143	10	482	73	8	97
(Ribosomal_S28e);(Ribosomal_S7)	1	135	149	137	149	0	1125	73	7	99
(Ribosomal_S30);(Ribosomal_S4)_(S4)	1	70	84	72	84	0	507	61	8	97
(Ribosomal_S7e);(Ribosomal_S8)	1	130	144	131	144	2	465	73	8	99
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	110	124	115	124	4	1033	70	7	96
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	112	126	115	126	0	1515	71	8	97
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	112	126	117	128	6	534	71	8	96
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	131	145	133	145	6	533	74	8	98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	120	134	128	134	5	310	72	8	94
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	24	24	26	25	12	884	100	8	92
(Kunitz_BPTI);(Trypsin)	1	40	95	42	96	0	670	100	94	95
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	39	57	39	57	10	2193	100	67	100
(GP120);(V-set)_(C1-set)	1	45	67	156	221	10	280	99	64	29
(GP120);(V-set)_(C1-set)	2	30	41	156	221	4	850	98	51	19
(GP120);(V-set)_(C1-set)	3	21	44	156	221	3	315	93	16	13
(GP120);(V-set)_(C1-set)	4	20	22	156	221	0	627	100	41	13
(GP120);(GP41)	1	40	65	40	67	16	2426	98	40	100
(GP41);(V-set)_(C1-set)	1	31	50	65	89	0	444	98	42	48
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	39	39	102	42	3	261	97	23	38
(Ribosomal_L16);(Ribosomal_L25p)	1	133	159	149	169	24	385	100	20	89
(Ribosomal_S11);(Ribosomal_S21)	1	136	160	149	176	0	1060	99	19	91
(Ribosomal_S18);(Ribosomal_S21)	1	107	131	149	156	0	257	98	19	72
(JAB);(JAB)_(MitMem_reg)	1	31	33	31	33	11	3073	100	52	100
(Ribosomal_L7Ae);(Ribosomal_S27)	1	47	61	52	66	3	517	61	8	90
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)	1	64	78	76	78	10	388	59	9	84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	48	62	57	62	10	475	50	6	84
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	53	67	56	67	22	535	52	7	95
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	52	66	58	68	36	314	52	6	90
(Kinesin);(Tubulin)_(Tubulin_C)	1	20	20	43	43	29	651	100	30	47
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	128	178	128	178	10	2628	100	90	100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	30	40	39	49	10	320	95	22	77
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	28	32	39	45	20	370	94	22	72
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	129	143	135	143	2	761	73	10	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	44	75	49	84	11	998	100	59	90
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	23	60	23	60	80	1937	100	88	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	21	57	23	60	80	255	100	93	91
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	23	50	23	51	9	1753	100	90	100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	2	22	48	23	51	9	664	98	85	96
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	126	140	137	140	3	765	73	8	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	125	139	136	142	1	955	73	9	92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	113	127	133	133	3	417	72	9	85
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	123	137	129	139	10	664	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	123	137	129	139	3	508	72	8	95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	110	124	129	139	13	281	73	8	85
(Ribosomal_L13);(Ribosomal_L18A)	1	123	137	136	137	12	680	72	8	90
(Ribosomal_L13);(Ribosomal_L35Ae)	1	128	131	134	144	2	225	79	8	96
(Ribosomal_L13e);(Ribosomal_L15e)	1	129	143	132	143	31	501	73	8	98
(Ribosomal_L13e);(Ribosomal_L18)	1	109	123	132	125	10	229	70	7	83
(Ribosomal_L13e);(Ribosomal_L27A)	1	124	138	125	138	10	1466	72	8	99
(Ribosomal_L13e);(Ribosomal_L29)	1	129	143	130	143	2	900	73	8	99
(Ribosomal_L13e);(Ribosomal_L36e)	1	121	135	132	135	10	641	72	8	92
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	118	132	132	133	31	203	73	9	89
(Ribosomal_L14);(Ribosomal_L24e)	1	140	215	146	215	0	516	82	7	96
(Ribosomal_L15e);(Ribosomal_L29)	1	126	140	146	140	20	355	72	9	86
(Ribosomal_L15e);(Ribosomal_L36e)	1	125	139	134	139	10	529	73	9	93
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	124	138	137	139	10	267	72	9	91
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	139	213	148	213	3	933	82	6	94
(Ribosomal_L16);(Ribosomal_L21e)	1	85	99	128	103	10	201	64	7	66
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	98	112	133	115	49	256	67	6	74
(Ribosomal_L18);(Ribosomal_L27A)	1	124	138	141	141	10	880	72	8	88
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	121	135	137	135	10	255	72	7	88
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	130	144	137	144	10	1108	73	8	95
(Ribosomal_L18A);(Ribosomal_L21e)	1	121	135	131	135	1	893	73	8	92
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	128	142	134	142	1	475	73	8	96
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	67	81	134	81	36	243	62	14	50
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	121	135	132	138	21	305	72	9	92
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	135	209	138	209	0	1227	82	5	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	118	132	140	132	4	300	72	8	84
(Ribosomal_L21e);(Ribosomal_L29e)	1	116	130	120	130	10	475	71	7	97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	123	137	131	137	10	594	72	8	94
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	120	134	140	204	10	850	71	7	86
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	127	141	131	142	10	215	74	9	97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	116	130	131	132	6	366	71	8	89
(Ribosomal_L24e);(Ribosomal_L3)	1	130	204	145	204	0	482	81	7	90
(Ribosomal_L24e);(Ribosomal_S6e)	1	50	64	84	68	1	815	58	3	60
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	20	34	154	36	8	342	0	0	13
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	127	141	140	141	10	191	72	9	91
(Ribosomal_L27A);(Ribosomal_L36e)	1	117	131	127	131	10	228	72	8	92
(Ribosomal_L29);(Ribosomal_L37e)	1	94	108	146	111	38	174	73	9	64
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	20	20	120	23	82	481	100	0	17
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	123	137	136	139	37	1031	72	9	90
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	124	138	132	140	10	261	72	8	94
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	124	138	134	138	9	307	72	9	93
(Ribosomal_L37e);(Ribosomal_L39)	1	118	137	139	175	29	220	73	7	85
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	93	107	123	112	10	188	67	6	76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	132	206	144	206	1	235	81	5	92
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2 _45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	21	36	21	37	11	1877	100	42	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)	1	21	36	21	37	90	7940	100	42	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	21	36	21	37	80	261	100	42	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	71	85	79	85	36	489	61	13	90
(Ribosomal_L32e);(Ribosomal_L6e)	1	63	77	79	77	41	519	60	13	80
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	75	89	78	89	40	843	63	12	96
(V-set)_(C1-set);(V-set_2)_(C1-set)	1	59	85	61	86	12	1655	100	88	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	22	42	22	42	84	7932	100	76	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	21	29	21	29	84	938	100	62	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	45	62	57	65	6	571	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	40	56	57	65	19	255	100	75	70
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	35	48	57	65	19	261	100	79	61
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	46	63	57	65	10	481	100	76	81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	45	62	57	65	19	547	100	76	79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	3	44	60	57	65	19	513	100	78	77
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	60	79	60	80	18	1947	100	76	100
(ATP-synt);(ATP-synt_Eps)	1	29	37	29	37	10	795	100	84	100
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)	1	24	32	26	34	21	659	100	81	92
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	4	801	33	5	100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	59	73	61	73	34	662	67	7	97
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	570	33	5	100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)	1	20	33	25	38	71	255	24	3	80
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	71	531	33	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	39	25	39	10	418	33	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	25	38	25	39	71	252	34	5	100
(CRPV_capsid);(Rhv)	1	21	21	24	25	6	1219	100	29	88
(Complex1_30kDa);(Complex1_49kDa)	1	25	28	25	28	5	2460	100	43	100
(Complex1_49kDa);(Oxidored_q6)	1	21	24	25	28	7	1297	100	50	84
(Complex1_49kDa);(Fer4_7)	1	21	24	21	24	17	1503	100	50	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	24	24	28	28	34	1048	100	17	86
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )	1	28	28	28	28	22	1299	100	7	100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	29	29	29	29	4	1580	100	10	100
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	56	56	56	56	37	1426	100	29	100
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	41	41	56	56	43	501	100	15	73
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	26	26	56	56	43	574	100	38	46
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	54	54	54	54	31	1638	100	26	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	2	23	23	54	54	31	253	100	22	43
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	51	51	54	51	27	314	100	27	94
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	52	52	52	52	27	623	100	27	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	43	43	47	43	38	2558	100	26	91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	37	37	42	42	43	778	100	22	88
(JAB)_(MitMem_reg);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_ (HEAT_2)_(RPN2_C)	1	32	32	50	38	60	888	100	22	64
(PCI)_(Rpn9_C);(VWA_2)	1	24	24	36	36	31	552	100	21	67
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	29	29	39	36	22	376	100	17	74
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	2	29	29	39	36	28	454	100	17	74
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	29	29	44	43	43	662	100	31	66
(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteasome)	1	24	24	27	26	34	428	100	29	89
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)	1	31	31	46	45	43	1077	100	13	67
(Calici_coat);(CRPV_capsid)	1	20	20	20	20	7	4578	100	20	100
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)	1	23	23	35	24	60	432	100	9	66
(Complex1_49kDa);(NADHdh)	1	21	21	21	21	21	1143	100	29	100
(JIP_LZII)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_ N)_(Proteasome)	1	27	27	27	27	4	695	100	26	100
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)	1	31	31	31	31	72	1304	100	26	100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)	1	30	30	30	30	66	1870	100	23	100
(JAB)_(MitMem_reg);(TPR_2)_(PCI)_(Rpn3_C)	1	27	27	31	31	72	784	100	11	87
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)	1	21	21	30	25	34	983	100	0	70
(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C);( TPR_2)_(PCI)_(Rpn3_C)	1	29	29	29	29	72	607	100	21	100