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PDBfam
Clusters with M>=20,SeqId<90 and pair Pfam Architecture
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(Proteasome);(Proteasome)_(Pr_beta_C)
1
64
332
68
411
13
1127
100
77
94
(Proteasome);(Proteasome)_(Pr_beta_C)
2
53
269
68
411
13
880
100
75
78
(Proteasome);(Proteasome)_(Pr_beta_C)
3
51
316
68
411
13
1396
100
78
75
(Proteasome);(Proteasome_A_N)_(Proteasome)
1
88
379
88
445
3
427
100
69
100
(Proteasome);(Proteasome_A_N)_(Proteasome)
2
88
379
88
445
2
494
100
71
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
1
68
285
68
411
0
627
100
71
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
2
68
333
68
411
13
622
100
73
100
(C1-set);(MHC_I)_(C1-set)
1
425
866
426
884
10
1279
100
91
100
(C1-set);(MHC_I)_(C1-set)
2
35
64
426
884
18
349
0
6
8
(C1-set);(MHC_I)_(C1-set)
3
29
87
426
884
18
262
0
0
7
(C1-set);(MHC_I)_(C1-set)
5
27
73
426
884
19
262
0
1
6
(C1-set);(MHC_I)_(C1-set)
6
24
46
426
884
72
334
0
0
6
(C1-set);(MHC_I)_(C1-set)
4
28
39
426
884
36
269
3
8
7
(Thrombin_light);(Trypsin)
1
109
375
109
435
10
1160
100
97
100
(Thrombin_light);(Trypsin)
2
21
32
109
435
75
260
3
16
19
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)
1
33
42
41
50
5
868
100
74
80
(Skp1_POZ);(ubiquitin)
1
20
58
20
59
10
1076
100
83
100
(Histone);(Histone)_(Histone_H2A_C)
1
85
215
85
227
12
2486
100
76
100
(Histone);(Histone)_(Histone_H2A_C)
2
77
197
85
227
40
667
99
74
91
(Histone);(TAF)
1
96
227
97
247
13
2448
100
76
99
(Histone);(TAF)
2
78
193
97
247
9
507
99
73
80
(Histone);(TAF)
3
77
201
97
247
65
264
99
73
79
(Histone)_(Histone_H2A_C);(TAF)
1
78
203
78
220
12
413
99
74
100
(MHC_I)_(C1-set);(V-set)_(C1-set)
1
78
151
91
171
10
431
97
40
86
(MHC_I)_(C1-set);(V-set)_(DUF1968)
1
78
155
82
167
10
477
97
43
95
(V-set)_(C1-set);(V-set)_(DUF1968)
1
208
380
208
390
7
2044
100
86
100
(C1-set);(MHC_I_3)_(C1-set)
1
40
134
40
137
12
1251
100
78
100
(Pico_P1A);(Rhv)
1
58
137
63
148
10
999
100
61
92
(Pico_P1A);(Rhv)
2
54
134
63
148
0
782
100
56
86
(Pico_P1A);(Rhv)
3
47
114
63
148
10
521
100
55
75
(ubiquitin);(UQ_con)
1
31
37
48
46
1
646
95
46
65
(Cyclin_N)_(Cyclin_C);(Pkinase)
1
35
166
37
183
10
1544
99
93
95
(COX1);(COX2_TM)_(COX2)
1
23
75
23
77
16
3564
100
71
100
(COX1);(COX3)
1
22
65
22
66
19
2494
100
68
100
(Photo_RC);(PRCH)_(PRC)
1
23
131
23
137
38
1618
100
97
100
(Photo_RC);(PRCH)_(PRC)
2
23
131
23
137
38
2677
100
98
100
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)
1
34
71
34
81
10
1604
100
83
100
(Cytochrom_C1);(UCR_14kD)
1
30
63
30
73
34
376
100
81
100
(Cytochrom_C1);(UCR_hinge)
1
30
63
30
73
3
1083
100
81
100
(Cytochrom_C1);(UCR_TM)_(Rieske)
1
22
50
22
65
4
747
100
80
100
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
27
60
30
73
31
842
100
85
90
(Cytochrom_C1);(UcrQ)
1
30
64
30
73
21
726
100
80
100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)
1
30
63
30
73
26
380
100
81
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)
1
30
64
30
73
34
1218
100
80
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
1
22
51
22
65
49
486
100
78
100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)
1
30
63
30
73
21
1004
100
81
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)
1
26
46
30
73
21
381
87
74
87
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)
1
22
51
22
65
26
877
100
78
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
27
52
30
73
26
231
100
83
90
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)
1
30
64
30
73
21
826
100
80
100
(UCR_14kD);(UcrQ)
1
27
60
30
73
21
459
100
85
90
(UCR_hinge);(UcrQ)
1
20
41
30
67
21
271
100
88
67
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)
1
22
51
22
65
31
639
100
78
100
(UCR_TM)_(Rieske);(UcrQ)
1
22
51
22
65
12
558
100
78
100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)
1
364
624
383
651
0
419
94
15
95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)
1
368
635
383
648
0
772
94
15
96
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
58
58
384
129
4
141
98
14
15
(Ribosom_S12_S23);(Ribosomal_S17)
1
237
476
267
509
3
219
100
22
89
(Ribosomal_L13);(Ribosomal_L20)
1
269
433
280
439
0
522
100
17
96
(Ribosomal_L13);(Ribosomal_L21p)
1
32
129
279
159
39
102
100
9
11
(Ribosomal_L13);(Ribosomal_L3)
1
200
293
862
418
3
294
87
10
23
(Ribosomal_L14);(Ribosomal_L19)
1
270
436
277
440
0
801
100
15
97
(Ribosomal_L14);(Ribosomal_L3)
1
278
487
864
515
0
242
92
11
32
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)
1
96
234
100
239
5
1094
100
10
96
(Ribosomal_L16);(Ribosomal_L27)
1
108
212
273
261
7
189
100
14
40
(Ribosomal_L17);(Ribosomal_L3)
1
95
130
274
288
26
112
100
24
35
(Ribosomal_L17);(Ribosomal_L3)
2
33
107
274
288
27
119
99
7
12
(Ribosomal_L17);(Ribosomal_L32p)
1
260
426
268
429
0
349
100
16
97
(Ribosomal_L19);(Ribosomal_L3)
1
268
434
278
439
0
712
100
16
96
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)
1
51
51
208
100
40
206
100
45
25
(Ribosomal_L20);(Ribosomal_L21p)
1
270
437
275
440
0
969
100
15
98
(Ribosomal_L21p);(Ribosomal_L27A)
1
94
128
279
241
40
163
100
21
34
(Ribosomal_L22);(Ribosomal_L32p)
1
269
436
280
439
0
468
100
17
96
(Ribosomal_L23);(Ribosomal_L29)
1
269
493
284
499
0
491
100
14
95
(Ribosomal_L27A);(Ribosomal_L35p)
1
264
427
271
433
0
781
100
16
97
(Ribosomal_L27A);(Ribosomal_L4)
1
271
429
296
442
0
464
100
17
92
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
1
163
293
188
315
0
262
100
14
87
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
1
152
268
179
283
0
960
100
14
85
(Ribosomal_L31);(Ribosomal_S13)
1
98
207
168
238
0
401
100
16
58
(Ribosomal_L31);(Ribosomal_S19)
1
89
178
166
230
9
436
99
20
54
(Ribosomal_L31);(Ribosomal_S19)
2
21
23
166
230
5
388
100
0
13
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
1
176
275
318
380
1
289
98
12
55
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
2
32
52
318
380
6
334
96
2
10
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)
1
29
43
317
43
56
265
40
5
9
(Ribosomal_S10);(Ribosomal_S14)
1
384
648
398
664
0
789
94
17
96
(Ribosomal_S10);(Ribosomal_S9)
1
63
161
398
317
5
187
98
12
16
(Ribosomal_S11);(Ribosomal_S18)
1
133
369
271
399
0
296
100
7
49
(Ribosomal_S11);(Ribosomal_S7)
1
219
449
410
498
2
240
99
19
53
(Ribosomal_S13);(Ribosomal_S19)
1
380
649
392
661
0
439
94
11
97
(Ribosomal_S14);(Ribosomal_S19)
1
129
156
388
167
10
316
99
20
33
(Ribosomal_S18);(Ribosomal_S6)
1
258
506
272
526
0
925
100
12
95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
1
22
22
279
36
2
417
91
9
8
(Ribosomal_S2);(Ribosomal_S8)
1
93
313
269
331
41
260
100
8
35
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)
1
294
557
338
594
0
331
94
19
87
(Ribosomal_S4)_(S4);(Ribosomal_S6)
1
31
80
259
199
28
366
5
0
12
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)
1
386
649
400
666
0
571
94
16
96
(Ribosomal_S7);(Ribosomal_S9)
1
349
585
408
622
0
460
93
13
86
(DNA_RNApol_7kD);(RNA_pol_A_bac)
1
111
205
112
228
0
582
100
52
99
(DNA_RNApol_7kD);(RNA_pol_N)
1
37
38
119
120
40
176
100
45
31
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
189
92
208
16
997
99
53
99
(RNA_pol_A_bac);(RNA_pol_L_2)
1
111
207
112
228
4
2026
100
61
99
(RNA_pol_A_bac);(RNA_pol_N)
1
111
205
112
228
3
1113
100
69
99
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
84
177
85
200
21
1695
99
71
99
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
187
92
208
22
433
99
63
99
(RNA_pol_L_2);(RNA_pol_Rpb8)
1
31
117
112
160
57
194
99
55
28
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
84
180
85
200
26
1310
99
58
99
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
91
189
92
208
37
1536
99
71
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
117
164
118
165
10
1628
99
62
99
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)
1
28
67
84
99
45
275
99
43
33
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
56
146
70
174
49
357
99
63
80
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
69
166
70
185
35
960
99
49
99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
70
166
70
186
44
1545
99
69
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
70
167
70
186
54
9191
99
60
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)
1
24
59
62
99
51
217
98
42
39
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)
1
70
167
70
186
4
2107
99
69
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
69
164
70
186
4
1902
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
69
166
70
186
29
1482
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
60
105
62
119
5
596
99
47
97
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(SHS2_Rpb7-N)_(S1)
1
20
21
69
91
17
250
100
38
29
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)
1
72
117
73
131
2
2058
99
48
99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)
1
67
110
69
127
4
440
98
44
97
(Synaptobrevin);(Syntaxin)_(SNARE)
1
25
29
25
30
4
1398
100
72
100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)
1
119
133
127
135
8
493
71
6
94
(KH_2)_(Ribosomal_S3_C);(S10_plectin)
1
119
133
119
133
0
881
71
6
100
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)
1
131
145
138
145
2
460
72
9
95
(Ribosom_S12_S23);(Ribosomal_S30)
1
105
119
111
119
10
458
68
8
95
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)
1
43
43
134
50
32
361
79
0
32
(Ribosomal_L7Ae);(S10_plectin)
1
25
25
119
30
3
292
72
0
21
(Ribosomal_S11);(Ribosomal_S26e)
1
117
131
117
131
10
1108
70
7
100
(Ribosomal_S11);(Ribosomal_S28e)
1
50
50
136
61
4
291
94
4
37
(Ribosomal_S11);(Ribosomal_S3Ae)
1
130
144
133
146
5
861
74
8
98
(Ribosomal_S13);(Ribosomal_S19e)
1
127
141
132
141
2
433
72
8
96
(Ribosomal_S13);(Ribosomal_S25)
1
122
136
126
138
0
462
71
7
97
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)
1
22
22
137
23
35
244
77
9
16
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)
1
133
147
133
147
0
707
73
7
100
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)
1
60
60
130
70
27
199
95
8
46
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)
1
114
128
137
130
10
194
70
8
83
(Ribosomal_S14);(S10_plectin)
1
113
127
119
129
0
290
70
6
95
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)
1
133
147
135
147
5
716
73
9
99
(Ribosomal_S17e);(Ribosomal_S3Ae)
1
27
27
128
29
4
220
100
7
21
(Ribosomal_S19e);(Ribosomal_S9)
1
112
125
132
129
28
228
71
8
85
(Ribosomal_S21e);(Ribosomal_S27e)
1
95
109
126
111
10
360
68
8
75
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)
1
124
138
126
138
2
1315
72
8
98
(Ribosomal_S21e);(Ribosomal_S8)
1
120
134
126
134
0
263
72
8
95
(Ribosomal_S24e);(Ribosomal_S4)_(S4)
1
68
82
80
83
8
229
61
7
85
(Ribosomal_S25);(Ribosomal_S7)
1
125
139
126
139
4
597
71
7
99
(Ribosomal_S26e);(Ribosomal_S3Ae)
1
114
128
117
131
10
256
71
6
97
(Ribosomal_S27e);(Ribosomal_S7e)
1
90
104
127
110
29
226
69
9
71
(Ribosomal_S27e);(Ribosomal_S8)
1
129
143
133
143
10
482
73
8
97
(Ribosomal_S28e);(Ribosomal_S7)
1
135
149
137
149
0
1125
73
7
99
(Ribosomal_S30);(Ribosomal_S4)_(S4)
1
70
84
72
84
0
507
61
8
97
(Ribosomal_S7e);(Ribosomal_S8)
1
130
144
131
144
2
465
73
8
99
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)
1
110
124
115
124
4
1033
70
7
96
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)
1
112
126
115
126
0
1515
71
8
97
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
112
126
117
128
6
534
71
8
96
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)
1
131
145
133
145
6
533
74
8
98
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )
1
120
134
128
134
5
310
72
8
94
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
1
24
24
26
25
12
884
100
8
92
(Kunitz_BPTI);(Trypsin)
1
40
95
42
96
0
670
100
94
95
(G-gamma);(Myc-LZ)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
39
57
39
57
10
2193
100
67
100
(GP120);(V-set)_(C1-set)
1
45
67
156
221
10
280
99
64
29
(GP120);(V-set)_(C1-set)
2
30
41
156
221
4
850
98
51
19
(GP120);(V-set)_(C1-set)
3
21
44
156
221
3
315
93
16
13
(GP120);(V-set)_(C1-set)
4
20
22
156
221
0
627
100
41
13
(GP120);(GP41)
1
40
65
40
67
16
2426
98
40
100
(GP41);(V-set)_(C1-set)
1
31
50
65
89
0
444
98
42
48
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
1
39
39
102
42
3
261
97
23
38
(Ribosomal_L16);(Ribosomal_L25p)
1
133
159
149
169
24
385
100
20
89
(Ribosomal_S11);(Ribosomal_S21)
1
136
160
149
176
0
1060
99
19
91
(Ribosomal_S18);(Ribosomal_S21)
1
107
131
149
156
0
257
98
19
72
(JAB);(JAB)_(MitMem_reg)
1
31
33
31
33
11
3073
100
52
100
(Ribosomal_L7Ae);(Ribosomal_S27)
1
47
61
52
66
3
517
61
8
90
(Ribosomal_S4)_(S4);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_ S4_C)
1
64
78
76
78
10
388
59
9
84
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)
1
48
62
57
62
10
475
50
6
84
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)
1
53
67
56
67
22
535
52
7
95
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)
1
52
66
58
68
36
314
52
6
90
(Kinesin);(Tubulin)_(Tubulin_C)
1
20
20
43
43
29
651
100
30
47
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
1
128
178
128
178
10
2628
100
90
100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)
1
30
40
39
49
10
320
95
22
77
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)
1
28
32
39
45
20
370
94
22
72
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)
1
129
143
135
143
2
761
73
10
96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)
1
44
75
49
84
11
998
100
59
90
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
23
60
23
60
80
1937
100
88
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
2
21
57
23
60
80
255
100
93
91
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
1
23
50
23
51
9
1753
100
90
100
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
2
22
48
23
51
9
664
98
85
96
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)
1
126
140
137
140
3
765
73
8
92
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)
1
125
139
136
142
1
955
73
9
92
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
113
127
133
133
3
417
72
9
85
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)
1
123
137
129
139
10
664
72
8
95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
1
123
137
129
139
3
508
72
8
95
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
2
110
124
129
139
13
281
73
8
85
(Ribosomal_L13);(Ribosomal_L18A)
1
123
137
136
137
12
680
72
8
90
(Ribosomal_L13);(Ribosomal_L35Ae)
1
128
131
134
144
2
225
79
8
96
(Ribosomal_L13e);(Ribosomal_L15e)
1
129
143
132
143
31
501
73
8
98
(Ribosomal_L13e);(Ribosomal_L18)
1
109
123
132
125
10
229
70
7
83
(Ribosomal_L13e);(Ribosomal_L27A)
1
124
138
125
138
10
1466
72
8
99
(Ribosomal_L13e);(Ribosomal_L29)
1
129
143
130
143
2
900
73
8
99
(Ribosomal_L13e);(Ribosomal_L36e)
1
121
135
132
135
10
641
72
8
92
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
118
132
132
133
31
203
73
9
89
(Ribosomal_L14);(Ribosomal_L24e)
1
140
215
146
215
0
516
82
7
96
(Ribosomal_L15e);(Ribosomal_L29)
1
126
140
146
140
20
355
72
9
86
(Ribosomal_L15e);(Ribosomal_L36e)
1
125
139
134
139
10
529
73
9
93
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
124
138
137
139
10
267
72
9
91
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
139
213
148
213
3
933
82
6
94
(Ribosomal_L16);(Ribosomal_L21e)
1
85
99
128
103
10
201
64
7
66
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
98
112
133
115
49
256
67
6
74
(Ribosomal_L18);(Ribosomal_L27A)
1
124
138
141
141
10
880
72
8
88
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)
1
121
135
137
135
10
255
72
7
88
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
130
144
137
144
10
1108
73
8
95
(Ribosomal_L18A);(Ribosomal_L21e)
1
121
135
131
135
1
893
73
8
92
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)
1
128
142
134
142
1
475
73
8
96
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
67
81
134
81
36
243
62
14
50
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)
1
121
135
132
138
21
305
72
9
92
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)
1
135
209
138
209
0
1227
82
5
98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)
1
118
132
140
132
4
300
72
8
84
(Ribosomal_L21e);(Ribosomal_L29e)
1
116
130
120
130
10
475
71
7
97
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
123
137
131
137
10
594
72
8
94
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
120
134
140
204
10
850
71
7
86
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)
1
127
141
131
142
10
215
74
9
97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)
1
116
130
131
132
6
366
71
8
89
(Ribosomal_L24e);(Ribosomal_L3)
1
130
204
145
204
0
482
81
7
90
(Ribosomal_L24e);(Ribosomal_S6e)
1
50
64
84
68
1
815
58
3
60
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)
1
20
34
154
36
8
342
0
0
13
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)
1
127
141
140
141
10
191
72
9
91
(Ribosomal_L27A);(Ribosomal_L36e)
1
117
131
127
131
10
228
72
8
92
(Ribosomal_L29);(Ribosomal_L37e)
1
94
108
146
111
38
174
73
9
64
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
20
20
120
23
82
481
100
0
17
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)
1
123
137
136
139
37
1031
72
9
90
(Ribosomal_L34e);(Ribosomal_L7Ae)
1
124
138
132
140
10
261
72
8
94
(Ribosomal_L36e);(Ribosomal_L7Ae)
1
124
138
134
138
9
307
72
9
93
(Ribosomal_L37e);(Ribosomal_L39)
1
118
137
139
175
29
220
73
7
85
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)
1
93
107
123
112
10
188
67
6
76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)
1
132
206
144
206
1
235
81
5
92
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2 _45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
21
36
21
37
11
1877
100
42
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_ Rpb2_7)
1
21
36
21
37
90
7940
100
42
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_ Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
21
36
21
37
80
261
100
42
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)
1
71
85
79
85
36
489
61
13
90
(Ribosomal_L32e);(Ribosomal_L6e)
1
63
77
79
77
41
519
60
13
80
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
75
89
78
89
40
843
63
12
96
(V-set)_(C1-set);(V-set_2)_(C1-set)
1
59
85
61
86
12
1655
100
88
97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
22
42
22
42
84
7932
100
76
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)
1
21
29
21
29
84
938
100
62
100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
1
45
62
57
65
6
571
100
76
79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
2
40
56
57
65
19
255
100
75
70
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
3
35
48
57
65
19
261
100
79
61
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
1
46
63
57
65
10
481
100
76
81
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
2
45
62
57
65
19
547
100
76
79
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
3
44
60
57
65
19
513
100
78
77
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)
1
60
79
60
80
18
1947
100
76
100
(ATP-synt);(ATP-synt_Eps)
1
29
37
29
37
10
795
100
84
100
(ATP-synt_DE_N)_(ATP-synt_DE);(ATP-synt_Eps)
1
24
32
26
34
21
659
100
81
92
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
4
801
33
5
100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)
1
59
73
61
73
34
662
67
7
97
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
71
570
33
5
100
(Ribosomal_L7Ae);(Stm1_N)_(HABP4_PAI-RBP1)
1
20
33
25
38
71
255
24
3
80
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
71
531
33
5
100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
39
25
39
10
418
33
5
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
25
38
25
39
71
252
34
5
100
(CRPV_capsid);(Rhv)
1
21
21
24
25
6
1219
100
29
88
(Complex1_30kDa);(Complex1_49kDa)
1
25
28
25
28
5
2460
100
43
100
(Complex1_49kDa);(Oxidored_q6)
1
21
24
25
28
7
1297
100
50
84
(Complex1_49kDa);(Fer4_7)
1
21
24
21
24
17
1503
100
50
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_II)_(EFG_IV)_(EFG_C); (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
24
24
28
28
34
1048
100
17
86
(Cwf_Cwc_15);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40 )
1
28
28
28
28
22
1299
100
7
100
(SKIP_SNW);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
29
29
29
29
4
1580
100
10
100
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)
1
56
56
56
56
37
1426
100
29
100
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
41
41
56
56
43
501
100
15
73
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
26
26
56
56
43
574
100
38
46
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
1
54
54
54
54
31
1638
100
26
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
2
23
23
54
54
31
253
100
22
43
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)
1
51
51
54
51
27
314
100
27
94
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)
1
52
52
52
52
27
623
100
27
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
43
43
47
43
38
2558
100
26
91
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(P C_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
1
37
37
42
42
43
778
100
22
88
(JAB)_(MitMem_reg);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_ (HEAT_2)_(RPN2_C)
1
32
32
50
38
60
888
100
22
64
(PCI)_(Rpn9_C);(VWA_2)
1
24
24
36
36
31
552
100
21
67
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
1
29
29
39
36
22
376
100
17
74
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
2
29
29
39
36
28
454
100
17
74
(Proteasome_A_N)_(Proteasome);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
29
29
44
43
43
662
100
31
66
(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteasome)
1
24
24
27
26
34
428
100
29
89
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(RPN1_RPN2_N)_(PC_rep)_(P C_rep)_(PC_rep)_(HEAT_2)_(RPN2_C)
1
31
31
46
45
43
1077
100
13
67
(Calici_coat);(CRPV_capsid)
1
20
20
20
20
7
4578
100
20
100
(JAB)_(MitMem_reg);(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3)
1
23
23
35
24
60
432
100
9
66
(Complex1_49kDa);(NADHdh)
1
21
21
21
21
21
1143
100
29
100
(JIP_LZII)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_ N)_(Proteasome)
1
27
27
27
27
4
695
100
26
100
(RPN7)_(PCI);(TPR_2)_(PCI)_(Rpn3_C)
1
31
31
31
31
72
1304
100
26
100
(CSN8_PSD8_EIF3K);(TPR_2)_(PCI)_(Rpn3_C)
1
30
30
30
30
66
1870
100
23
100
(JAB)_(MitMem_reg);(TPR_2)_(PCI)_(Rpn3_C)
1
27
27
31
31
72
784
100
11
87
(DSS1_SEM1);(TPR_2)_(PCI)_(Rpn3_C)
1
21
21
30
25
34
983
100
0
70
(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEAT_2)_(RPN2_C);( TPR_2)_(PCI)_(Rpn3_C)
1
29
29
29
29
72
607
100
21
100