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PDBfam
Clusters with M>=20,SeqId<90 and pair Pfam Architecture
Pfam Architecture
Cluster#
#CFs/Cluster
#Entries/Cluster
#CFs/Group
#Entries/Group
Minimum Seq Identity
Surface Area
In PDBBA(%)
In PISABA(%)
CFs Cluster/Group(%)
(Hormone_2);(HRM)_(7tm_2)
1
21
21
22
42
4
1561
100
5
95
(CHCH);(MRP-S35)
1
29
29
29
29
85
376
100
7
100
(CHCH);(Ribosomal_S21)
1
29
29
32
32
85
919
100
7
91
(CHCH);(Ribosomal_S6)
1
29
29
29
29
85
509
100
7
100
(CHCH);(Ribosomal_S7)
1
29
29
32
32
85
833
100
7
91
(DAP3);(MRP-S28)
1
28
28
37
37
84
1107
100
7
76
(DAP3);(Ribosomal_S7)
1
29
29
36
36
85
914
100
7
81
(DAP3);(Ribosomal_S9)
1
35
35
42
42
17
959
100
6
83
(DUF1713);(Ribosomal_S15)
1
29
29
29
29
5
617
100
7
100
(L51_S25_CI-B8);(MRP-S22)
1
29
29
29
29
68
458
100
7
100
(L51_S25_CI-B8);(MRP-S26)
1
29
29
29
29
75
604
100
7
100
(L51_S25_CI-B8);(Ribosomal_S16)
1
29
29
29
29
87
631
100
7
100
(L51_S25_CI-B8);(Ribosomal_S17)
1
29
29
29
29
86
1317
100
7
100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
29
82
537
100
7
100
(MRP-S22);(MRP-S34)
1
28
28
29
29
68
261
100
7
97
(MRP-S22);(Ribosomal_S16)
1
29
29
29
29
68
1091
100
7
100
(MRP-S22);(Ribosomal_S18)
1
29
29
29
29
68
2014
100
7
100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
29
68
1188
100
7
100
(MRP-S23);(MRP-S35)
1
29
29
29
29
82
907
100
7
100
(MRP-S23);(Ribosomal_S18)
1
29
29
29
29
80
463
100
7
100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
29
82
585
100
7
100
(MRP-S24);(MRP-S28)
1
28
28
28
28
84
1361
100
7
100
(MRP-S24);(MRP-S31)
1
29
29
29
29
75
277
100
7
100
(MRP-S24);(MRP-S33)
1
29
29
29
29
83
536
100
7
100
(MRP-S24);(Ribosomal_S10)
1
29
29
29
29
13
595
100
7
100
(MRP-S24);(Ribosomal_S14)
1
29
29
29
29
86
985
100
7
100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
29
82
516
100
7
100
(MRP-S24);(Ribosomal_S9)
1
20
20
23
23
78
225
100
10
87
(MRP-S26);(MRP-S34)
1
29
29
29
29
75
731
100
7
100
(MRP-S26);(Ribosomal_S17)
1
27
27
27
27
75
264
100
7
100
(MRP-S26);(Ribosomal_S18)
1
29
29
29
29
75
794
100
7
100
(MRP-S26);(Ribosomal_S18)
2
29
29
29
29
75
605
100
7
100
(MRP-S27);(MRP-S34)
1
27
27
27
27
81
1339
100
7
100
(MRP-S27);(Ribosomal_S18)
1
27
27
27
27
81
297
100
7
100
(MRP-S28);(MRP-S31)
1
28
28
28
28
75
1161
100
7
100
(MRP-S28);(Ribosomal_S9)
1
28
28
35
35
78
1313
100
7
80
(MRP-S31);(MRP-S33)
1
29
29
29
29
75
672
100
7
100
(MRP-S31);(Ribosomal_S10)
1
29
29
29
29
75
250
100
7
100
(MRP-S31);(Ribosomal_S14)
1
29
29
29
29
75
605
100
7
100
(MRP-S33);(Ribosomal_S14)
1
36
36
36
36
22
1209
97
6
100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
29
82
1026
100
7
100
(MRP-S34);(Ribosomal_S16)
1
23
23
30
30
82
230
100
9
77
(MRP-S34);(Ribosomal_S18)
1
29
29
29
29
82
763
100
7
100
(MRP-S35);(Ribosomal_S18)
1
20
20
24
24
83
218
100
10
83
(MRP-S35);(Ribosomal_S2)
1
29
29
29
29
7
1101
100
7
100
(MRP-S35);(Ribosomal_S21)
1
29
29
29
29
85
698
100
7
100
(Ribosomal_S2);(Ribosomal_S21)
1
26
26
36
36
75
236
100
8
72
(Ribosomal_S21);(Ribosomal_S9)
1
22
22
25
25
78
233
100
9
88
(GP120);(V-set_2)_(C1-set)
1
37
47
86
111
12
970
100
47
43
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)
1
24
24
24
24
10
2674
100
8
100
(AAA_16)_(ORC5_C);(ORC2)
1
23
23
23
23
21
883
100
4
100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)
1
34
34
34
34
34
490
100
18
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)
1
23
23
23
23
44
3222
100
30
100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)
1
22
22
23
23
30
2846
100
50
96
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)
1
27
27
27
27
33
2789
100
41
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
1
71
71
72
72
42
1698
100
15
99
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
2
69
69
72
72
42
301
100
16
96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
80
97
80
97
42
8076
100
11
100
(eIF-6);(Ribosomal_L14)
1
38
38
38
38
60
833
100
37
100
(eIF-6);(Ribosomal_L3)
1
22
22
22
22
61
253
100
32
100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)
1
20
20
20
20
26
504
100
30
100
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)
1
21
34
23
36
8
342
0
0
91
(Ribosomal_L7Ae);(WD40)_(WD40)
1
21
21
21
21
33
467
100
5
100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)
1
133
133
133
133
1
1261
99
8
100
(Ribosomal_S17e);(Ribosomal_S3Ae)
1
66
66
71
71
4
232
100
6
93
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)
1
135
135
135
135
0
1490
99
8
100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)
1
132
132
132
132
3
529
99
8
100
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)
1
105
105
109
109
5
585
98
7
96
(Brix);(Mpp10)
1
25
25
27
27
32
1362
100
4
93
(Brix);(Ribosomal_S9)
1
22
22
22
22
58
312
100
5
100
(EMG1);(Nop14)
1
22
22
22
22
24
1159
100
5
100
(EMG1);(Ribosomal_S7)
1
21
21
21
21
69
384
100
5
100
(Fcf1);(Fibrillarin)
1
24
24
24
24
53
670
100
4
100
(Fcf1);(Ribosomal_S8)
1
23
23
23
23
52
364
100
4
100
(Fcf1);(S4)
1
27
27
27
27
52
847
100
4
100
(Fcf1);(Sas10_Utp3)_(Sas10)
1
24
24
24
24
30
679
100
4
100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
49
564
100
5
100
(Fcf2);(Fibrillarin)
1
23
23
23
23
30
1460
100
4
100
(Fibrillarin);(NOP5NT)_(Nop)
1
26
26
26
26
39
1319
100
4
100
(Fibrillarin);(Ribosomal_L7Ae)
1
22
22
27
30
61
456
100
5
81
(Fibrillarin);(Sas10_Utp3)_(Sas10)
1
23
23
23
23
30
1094
100
4
100
(Fibrillarin);(Utp11)
1
22
22
22
22
29
998
100
5
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)
1
24
24
24
24
32
1827
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)
1
27
27
27
27
49
1252
100
4
100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)
1
28
28
28
28
37
2704
100
4
100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)
1
26
26
26
26
39
502
100
4
100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)
1
23
23
23
23
24
768
100
4
100
(NOP5NT)_(Nop);(Utp14)
1
21
21
21
21
28
592
100
5
100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)
1
23
23
23
23
49
902
100
4
100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)
1
23
23
23
23
25
2522
100
4
100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
22
22
22
22
44
607
100
5
100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)
1
20
20
20
20
30
509
100
5
100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
55
512
100
5
100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)
1
21
21
21
21
37
473
100
5
100
(S4);(Sas10_Utp3)_(Sas10)
1
22
22
22
22
30
432
100
5
100
(U3_assoc_6)_(TPR_14);(Utp14)
1
21
21
21
21
24
1182
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)
1
20
20
20
20
2
565
100
5
100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)
1
20
20
20
20
24
383
100
5
100
(U3_snoRNA_assoc);(Utp11)
1
21
21
21
21
23
600
100
5
100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)
1
21
21
21
21
28
2311
100
5
100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
52
52
55
55
82
491
100
2
95
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)
1
91
91
91
91
28
644
99
11
100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)
1
51
51
51
51
10
1939
100
29
100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)
1
31
31
32
32
66
625
100
19
97
(JAB)_(MitMem_reg);(VWA_2)
1
44
44
44
44
4
609
100
20
100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)
1
31
31
32
32
72
594
100
19
97
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)
1
58
58
58
58
37
1413
100
28
100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)
1
29
29
29
29
31
321
100
38
100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)
1
30
30
30
30
31
1614
100
37
100
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)
1
31
31
31
31
37
2701
100
35
100
(Synaptobrevin);(Syntaxin)_(SNARE)
1
26
29
26
30
0
1402
100
72
100
(ATP-synt);(ATP-synt_Eps)
1
103
114
103
114
10
996
100
75
100
(ATP-synt_DE_N);(ATP-synt_Eps)
1
82
83
82
83
12
1037
100
70
100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)
1
43
43
44
44
3
1393
100
35
98
(ATP-synt_8);(ATP-synt_A)
1
25
25
25
25
4
927
100
24
100
(ATP-synt_A);(WRW)
1
20
20
25
25
32
691
100
25
80
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)
1
23
23
23
23
16
684
100
17
100
(ATP-synt_E);(ATP-synt_G)
1
20
20
20
20
88
646
100
30
100
(Mt_ATP-synt_B);(WRW)
1
20
20
25
25
1
557
100
30
80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)
1
56
67
61
72
5
1263
100
42
92
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
1
22
23
30
31
5
248
96
4
73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)
2
21
22
30
31
17
250
95
5
70
(Ribosomal_L13);(Ribosomal_L14e)
1
26
26
26
26
4
926
100
12
100
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
78
78
79
79
87
500
99
1
99
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
68
68
71
71
87
227
99
1
96
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
83
83
83
83
41
870
99
1
100
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)
1
76
76
77
77
44
352
99
1
99
(eIF-1a);(Ribosom_S12_S23)
1
33
33
33
33
8
388
97
18
100
(Calici_coat);(CRPV_capsid)
1
29
30
29
30
7
4513
100
23
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)
1
20
53
20
53
35
2594
100
45
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)
1
61
78
68
85
26
235
100
8
90
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)
1
54
95
54
99
0
1603
100
69
100
(Cytochrom_C1);(UCR_14kD)
1
40
75
43
81
23
395
100
76
93
(Cytochrom_C1);(UCR_hinge)
1
44
79
44
82
2
1087
100
72
100
(Cytochrom_C1);(UCR_UQCRX_QCR9)
1
41
75
44
82
0
838
100
75
93
(Cytochrom_C1);(UcrQ)
1
42
78
42
80
0
734
100
73
100
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)
1
44
80
44
82
23
1262
100
71
100
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)
1
42
78
42
80
4
1008
100
74
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)
1
28
47
40
78
26
274
100
74
70
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)
1
42
77
42
80
21
826
100
74
100
(UCR_14kD);(UcrQ)
1
38
73
41
79
17
464
100
78
93
(CHCH);(GRIM-19)
1
56
56
56
56
22
1708
100
14
100
(CHCH);(MWFE)
1
56
56
56
56
21
941
100
14
100
(CHCH);(NADHdh)
1
36
36
49
49
57
257
100
19
73
(RNA_pol_I_A49);(RNA_polI_A34)
1
31
35
31
35
38
2028
100
83
100
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
4
801
41
5
100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
571
41
5
100
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
533
41
5
100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
10
418
41
5
100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)
1
24
37
24
37
74
252
41
5
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)
1
62
62
62
62
4
464
98
0
100
(C1-set);(MHC_I)_(C1-set)
1
518
1066
519
1150
8
1249
100
93
100
(C1-set);(MHC_I)_(C1-set)
2
41
98
519
1150
18
258
0
3
8
(C1-set);(MHC_I)_(C1-set)
3
30
45
519
1150
23
269
0
9
6
(C1-set);(MHC_I)_(C1-set)
4
28
69
519
1150
83
263
0
0
5
(C1-set);(MHC_I)_(C1-set)
5
25
63
519
1150
19
351
0
6
5
(C1-set);(MHC_I)_(C1-set)
6
23
57
519
1150
72
334
0
0
4
(Ribosom_S12_S23);(Ribosomal_S17)
1
333
560
379
762
0
221
100
16
88
(Ribosomal_L13);(Ribosomal_L20)
1
433
631
434
725
0
530
100
14
100
(Ribosomal_L14);(Ribosomal_L19)
1
442
646
445
736
0
802
100
14
99
(Ribosomal_L16);(Ribosomal_L27)
1
56
151
85
265
7
250
100
3
66
(Ribosomal_L17);(Ribosomal_L32p)
1
422
622
428
715
0
378
100
14
99
(Ribosomal_L19);(Ribosomal_L3)
1
440
644
444
735
0
728
100
14
99
(Ribosomal_L20);(Ribosomal_L21p)
1
438
643
438
730
0
980
100
13
100
(Ribosomal_L22);(Ribosomal_L32p)
1
443
646
443
735
0
469
100
14
100
(Ribosomal_L27A);(Ribosomal_L35p)
1
418
610
430
721
0
808
100
12
97
(Ribosomal_L27A);(Ribosomal_L4)
1
446
629
456
746
0
495
100
14
98
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
1
250
408
305
558
1
235
100
11
82
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)
2
33
36
305
558
7
1394
100
14
11
(Ribosomal_S10);(Ribosomal_S14)
1
622
904
624
1022
0
789
97
14
100
(Ribosomal_S11);(Ribosomal_S18)
1
103
343
157
486
3
319
100
5
66
(Ribosomal_S11);(Ribosomal_S18)
2
29
29
157
486
27
279
100
7
18
(Ribosomal_S11);(Ribosomal_S7)
1
305
522
369
744
0
244
100
15
83
(Ribosomal_S18);(Ribosomal_S6)
1
419
687
422
807
0
906
100
10
99
(Ribosomal_S7);(Ribosomal_S9)
1
556
808
619
993
0
458
97
12
90
(Ribosomal_S7);(Ribosomal_S9)
2
32
32
619
993
78
1403
100
6
5
(Ribosomal_L23);(Ribosomal_L29)
1
416
669
416
758
0
493
100
12
100
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)
1
205
350
233
444
0
981
100
12
88
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)
1
565
824
581
973
0
417
97
11
97
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)
1
573
878
577
969
0
768
97
13
99
(Ribosomal_S13);(Ribosomal_S19)
1
593
894
602
994
0
435
97
10
99
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)
1
607
888
609
1001
0
578
97
13
100
(Ribosomal_L31);(Ribosomal_S13)
1
143
277
172
375
0
408
100
13
83
(Ribosomal_L31);(Ribosomal_S19)
1
147
256
177
367
5
437
100
14
83
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
1
209
266
365
611
24
305
100
13
57
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
2
64
64
365
611
39
287
98
0
18
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)
3
48
74
365
611
4
308
100
1
13
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)
1
322
588
372
751
0
323
100
16
87
(Ribosomal_S4)_(S4);(Ribosomal_S6)
1
29
72
62
249
28
377
4
0
47
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
34
34
34
34
4
662
100
6
100
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)
1
97
266
97
300
5
1098
100
9
100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)
1
35
279
38
359
11
2645
100
96
92
(CHCH);(NADHdh_A3)
1
49
49
53
53
39
1098
100
14
92
(CHCH);(Ndufs5)
1
46
46
53
53
57
535
100
15
87
(Cytochrom_C1);(UCR_TM)_(Rieske)
1
29
59
33
71
0
793
100
75
88
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
1
29
62
33
71
49
519
100
74
88
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)
2
25
50
33
71
49
832
86
70
76
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)
1
32
63
33
71
31
632
100
70
97
(UCR_TM)_(Rieske);(UcrQ)
1
29
62
33
71
4
577
100
74
88
(G-alpha);(V-set)
1
72
72
72
96
1
835
100
1
100
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
28
28
28
28
24
1345
100
7
100
(DNA_RNApol_7kD);(RNA_pol_A_bac)
1
112
234
112
250
0
582
100
59
100
(RNA_pol_A_bac);(RNA_pol_L_2)
1
111
235
112
250
4
2036
100
66
99
(RNA_pol_A_bac);(RNA_pol_N)
1
112
234
112
250
20
1112
100
71
100
(MRP-S23);(Ribosomal_S2)
1
29
29
29
29
75
1793
100
7
100
(MRP-S26);(Ribosomal_S15)
1
29
29
32
32
71
486
100
7
91
(MRP-S26);(Ribosomal_S16)
1
30
30
33
33
4
777
100
7
91
(MRP-S26);(Ribosomal_S6)
1
29
29
32
32
75
904
100
7
91
(MRP-S28);(MRP-S33)
1
28
28
35
35
83
657
100
7
80
(MRP-S28);(Ribosomal_S10)
1
28
28
35
35
13
2093
100
7
80
(Ribosomal_S21);(Ribosomal_S6)
1
26
26
32
32
19
222
100
8
81
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)
1
29
29
29
29
38
2645
100
24
100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)
1
21
21
23
23
36
370
100
19
91
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
1
48
48
52
52
26
395
100
29
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
2
48
48
52
52
31
392
100
27
92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)
3
43
43
52
52
60
483
100
30
83
(Ribosomal_S11);(Ribosomal_S28e)
1
95
95
111
111
4
288
99
6
86
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
1
73
73
131
131
13
749
100
51
56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
2
71
71
131
131
13
1199
100
63
54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)
3
66
66
131
131
12
599
100
9
50
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)
1
33
33
57
58
31
316
100
27
58
(DSS1_SEM1);(PCI)_(Rpn3_C)
1
24
24
41
41
34
965
100
0
59
(DSS1_SEM1);(RPN7)_(PCI)
1
32
32
57
57
0
952
100
3
56
(DSS1_SEM1);(RPN7)_(PCI)
2
25
25
57
57
37
851
100
56
44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)
1
39
39
52
52
31
789
100
18
75
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
1
27
27
58
58
43
590
100
37
47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
2
23
23
58
58
43
510
100
26
40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
3
22
22
58
58
43
507
100
0
38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)
4
20
20
58
58
43
485
100
0
34
(JAB)_(MitMem_reg);(RPN7)_(PCI)
1
48
49
62
63
4
426
100
18
77
(PCI)_(Rpn3_C);(RPN7)_(PCI)
1
51
51
51
51
27
1261
100
29
100
(ATP-synt_A);(Mt_ATP-synt_B)
1
32
32
39
39
6
713
100
19
82
(ATP-synt_A);(Mt_ATP-synt_D)
1
22
22
32
32
85
360
100
27
69
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
1
27
35
27
36
13
2224
97
46
100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)
2
27
35
27
36
13
1404
94
43
100
(Ribosomal_L14e);(Ribosomal_L18A)
1
25
25
27
27
14
1066
100
8
93
(Ribosomal_L18);(Ribosomal_L28e)
1
93
93
98
98
5
228
99
3
95
(Ribosomal_L24e);(Ribosomal_S6e)
1
82
95
93
106
1
801
76
2
88
(Ribosomal_L28e);(Ribosomal_L32e)
1
96
96
102
102
0
762
99
3
94
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
102
102
102
102
13
943
99
4
100
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)
1
22
23
23
24
8
835
100
43
96
(Calici_coat);(Rhv)
1
27
28
28
29
9
1145
100
29
96
(CRPV_capsid);(Rhv)
1
26
26
27
27
5
1296
100
35
96
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
73
86
73
92
4
2611
100
38
100
(CI-B14_5a);(Complex1_30kDa)
1
46
46
46
46
84
1282
100
11
100
(CI-B14_5a);(Complex1_49kDa)
1
46
46
46
46
84
1485
100
11
100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)
1
40
40
45
45
84
224
100
10
89
(CI-B14_5a);(ETC_C1_NDUFA5)
1
43
43
45
45
83
380
100
9
96
(CI-B14_5a);(Fer4_7)
1
46
46
46
46
84
999
100
11
100
(CI-B14_5a);(GRIM-19)
1
42
42
45
45
9
478
100
10
93
(CI-B14_5a);(NDUFA12)
1
43
43
45
45
84
498
100
12
96
(Complex1_30kDa);(Complex1_49kDa)
1
84
92
84
92
3
2424
100
29
100
(Complex1_30kDa);(Complex1_LYR)
1
61
61
61
61
17
1039
100
20
100
(Complex1_30kDa);(ETC_C1_NDUFA4)
1
58
58
58
58
29
1332
100
14
100
(Complex1_30kDa);(ETC_C1_NDUFA5)
1
62
62
62
62
2
1424
100
19
100
(Complex1_30kDa);(Fer4_7)
1
59
59
71
79
19
269
100
20
83
(Complex1_30kDa);(Oxidored_q6)
1
79
87
81
89
18
677
100
31
98
(Complex1_49kDa);(dNK)
1
42
42
45
45
78
460
100
7
93
(Complex1_49kDa);(ESSS)
1
26
26
37
37
79
227
100
12
70
(Complex1_49kDa);(ETC_C1_NDUFA5)
1
58
58
61
61
31
428
100
21
95
(Complex1_49kDa);(Fer4_7)
1
83
91
83
91
4
1745
100
30
100
(Complex1_49kDa);(GRIM-19)
1
61
61
61
61
22
931
100
20
100
(Complex1_49kDa);(NADHdh)
1
75
80
78
83
3
1098
100
24
96
(Complex1_49kDa);(Oxidored_q2)
1
27
27
44
44
66
256
100
7
61
(Complex1_49kDa);(Oxidored_q4)
1
56
61
68
73
10
464
100
30
82
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)
1
42
42
46
46
67
311
100
10
91
(Complex1_49kDa);(Oxidored_q6)
1
84
92
84
92
1
1460
100
29
100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
48
48
49
49
54
848
100
15
98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)
1
30
30
50
50
64
387
100
13
60
(Complex1_49kDa);(zf-CHCC)
1
40
40
46
46
25
221
100
12
87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)
1
54
54
57
57
29
506
100
15
95
(Complex1_LYR);(ETC_C1_NDUFA4)
1
56
56
56
56
17
659
100
14
100
(Complex1_LYR);(NDUF_B12)
1
51
51
55
55
22
458
100
14
93
(Complex1_LYR);(NDUF_B4)
1
52
52
56
56
61
1308
100
17
93
(Complex1_LYR);(NDUF_B5)
1
47
47
50
50
24
534
100
15
94
(Complex1_LYR);(NDUF_B6)
1
50
50
50
50
25
1015
100
14
100
(Complex1_LYR);(NDUF_B8)
1
48
48
51
51
21
405
100
10
94
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)
1
56
56
60
60
22
412
100
18
93
(Complex1_LYR);(PP-binding)
1
74
82
77
85
3
743
100
26
96
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
60
60
60
60
22
1381
100
18
100
(COX1);(COX2_TM)_(COX2)
1
29
90
29
93
15
3551
100
74
100
(COX1);(COX3)
1
30
83
30
85
7
2448
100
72
100
(COX1);(COX7C)
1
22
74
22
76
22
1695
100
68
100
(COX2_TM)_(COX2);(COX6B)
1
22
70
22
76
41
966
100
63
100
(COX2_TM)_(COX2);(COX6C)
1
20
73
20
74
11
1441
100
71
100
(COX3);(COX5B)
1
22
74
22
76
14
895
100
69
100
(COX3);(COX7a)
1
22
69
22
76
0
1311
100
70
100
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)
1
39
73
43
81
5
423
100
77
91
(dNK);(ESSS)
1
43
43
47
47
58
412
100
14
91
(dNK);(NDUF_C2)
1
50
50
50
50
42
382
100
14
100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
51
51
51
51
54
1584
100
14
100
(ESSS);(NDUF_B5)
1
49
49
50
50
24
891
100
14
98
(ESSS);(NDUFB10)
1
50
50
50
50
31
1518
100
14
100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)
1
50
50
50
50
5
1589
100
14
100
(ETC_C1_NDUFA4);(Fer4_7)
1
53
53
56
56
30
248
100
13
95
(Fer4_7);(GRIM-19)
1
56
56
60
60
22
358
100
20
93
(Fer4_7);(NADHdh)
1
75
80
76
81
16
714
100
24
99
(Fer4_7);(NADHdh_A3)
1
54
54
58
58
7
329
100
19
93
(Fer4_7);(NDUFA12)
1
60
60
60
60
26
1929
100
20
100
(Fer4_7);(Oxidored_q6)
1
83
91
83
91
1
1280
100
30
100
(Fer4_7);(zf-CHCC)
1
61
61
61
61
25
945
100
18
100
(GRIM-19);(MWFE)
1
59
59
62
62
21
569
100
19
95
(GRIM-19);(NADHdh)
1
63
63
63
63
22
916
100
17
100
(GRIM-19);(NADHdh_A3)
1
54
54
57
57
21
575
100
20
95
(GRIM-19);(Ndufs5)
1
57
57
61
61
22
1251
100
19
93
(GRIM-19);(Oxidored_q3)
1
51
51
62
62
0
725
100
18
82
(MWFE);(NADHdh)
1
63
63
63
63
2
1530
100
17
100
(MWFE);(Oxidored_q3)
1
55
55
58
58
1
296
100
13
95
(NADH_B2);(NDUF_B12)
1
54
54
54
54
21
842
100
11
100
(NADH_B2);(NDUF_B7)
1
52
52
54
54
22
699
100
12
96
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
55
55
55
55
21
1444
100
11
100
(NADH_oxidored);(NDUF_B5)
1
48
48
50
50
24
634
100
15
96
(NADH_oxidored);(NDUFB10)
1
43
43
46
46
9
318
100
7
93
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)
1
49
49
50
50
67
732
100
14
98
(NADHdh);(NADHdh_A3)
1
63
63
63
63
11
658
100
17
100
(NADHdh);(NDUFA12)
1
30
30
41
41
26
227
100
10
73
(NADHdh);(Oxidored_q3)
1
78
83
81
86
0
1030
100
25
96
(NADHdh);(Oxidored_q4)
1
81
86
81
86
3
2699
100
24
100
(NADHdh);(Oxidored_q6)
1
78
83
78
83
0
1172
100
23
100
(NADHdh_A3);(Oxidored_q4)
1
54
54
62
62
22
342
100
17
87
(NDUF_B12);(PP-binding)
1
52
52
55
55
0
623
100
13
95
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
52
52
55
55
31
805
100
13
95
(NDUF_B4);(NDUF_B8)
1
47
47
52
52
75
1794
100
9
90
(NDUF_B4);(NDUFB10)
1
49
49
52
52
9
380
100
18
94
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)
1
52
52
60
60
61
1301
100
17
87
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
52
52
59
59
61
868
100
17
88
(NDUF_B5);(NDUF_B6)
1
43
43
46
46
73
254
100
7
93
(NDUF_B5);(NDUF_C2)
1
47
47
50
50
24
681
100
15
94
(NDUF_B5);(NDUFB10)
1
50
50
50
50
9
1075
100
14
100
(NDUF_B5);(Ndufs5)
1
47
47
50
50
70
968
100
9
94
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)
1
51
51
51
51
24
1171
100
14
100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
44
44
50
50
54
295
100
9
88
(NDUF_B6);(NDUF_B7)
1
45
45
46
46
69
774
100
7
98
(NDUF_B6);(NDUFB10)
1
46
46
50
50
9
1176
100
7
92
(NDUF_B6);(PP-binding)
1
47
47
50
50
5
524
100
15
94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
46
46
50
50
64
899
100
7
92
(NDUF_B7);(NDUF_B8)
1
50
50
50
50
21
1319
100
10
100
(NDUF_B7);(NDUFB10)
1
49
49
54
54
9
527
100
12
91
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
55
55
59
59
23
867
100
18
93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)
1
48
48
51
51
21
493
100
10
94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
51
51
51
51
21
1640
100
10
100
(NDUF_C2);(NDUFB10)
1
51
51
51
51
9
704
100
16
100
(NDUF_C2);(Ndufs5)
1
29
29
40
40
70
226
100
7
72
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)
1
41
41
55
55
67
243
100
10
75
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
51
51
51
51
42
999
100
14
100
(NDUFA12);(Oxidored_q6)
1
57
57
60
60
26
304
100
21
95
(NDUFA12);(zf-CHCC)
1
51
51
54
54
26
629
100
16
94
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)
1
50
50
59
59
9
744
100
18
85
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
50
50
59
59
9
1068
100
18
85
(Ndufs5);(Oxidored_q2)
1
62
62
62
62
22
494
100
18
100
(Ndufs5);(Oxidored_q3)
1
49
49
61
61
51
785
100
18
80
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
50
50
50
50
54
872
100
14
100
(Oxidored_q2);(Oxidored_q3)
1
82
87
82
87
0
2815
100
25
100
(Oxidored_q2);(Oxidored_q4)
1
77
82
82
87
1
410
100
27
94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
51
51
51
51
6
1620
100
14
100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
55
55
59
59
6
489
100
22
93
(Oxidored_q3);(Oxidored_q4)
1
80
85
82
87
0
1804
100
26
98
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
48
48
51
51
0
752
100
15
94
(Oxidored_q4);(Oxidored_q6)
1
42
47
64
69
24
510
100
28
66
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)
1
51
51
51
51
54
1169
100
14
100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)
1
62
62
62
62
28
2216
100
19
100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)
1
43
43
55
55
64
219
100
16
78
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
1
23
45
23
55
6
1632
100
73
100
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)
2
23
43
23
55
6
929
100
72
100
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)
1
34
56
43
81
21
399
88
70
79
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)
1
44
44
50
50
0
292
100
16
88
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)
1
47
47
51
51
41
966
100
15
92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)
1
48
48
50
50
54
512
100
15
96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)
1
46
46
55
55
20
598
100
20
84
(2Fe-2S_thioredx);(NDUFV3)
1
45
45
45
45
70
994
100
11
100
(CHCH);(NDUF_B5)
1
45
45
49
49
24
617
100
13
92
(CHCH);(NDUF_C2)
1
48
48
49
49
42
641
100
15
98
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)
1
42
42
45
45
67
257
100
7
93
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)
1
42
42
45
45
57
257
100
7
93
(Complex1_30kDa);(NmrA)
1
35
35
38
38
82
545
100
6
92
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)
1
45
45
45
45
70
1129
100
11
100
(Complex1_LYR);(NmrA)
1
35
35
38
38
82
378
100
6
92
(dNK);(NADH_dh_m_C1)
1
46
46
49
49
58
580
100
15
94
(ETC_C1_NDUFA4);(NDUFV3)
1
37
37
40
40
70
261
100
11
92
(ETC_C1_NDUFA4);(NmrA)
1
35
35
38
38
82
348
100
6
92
(NADH_dh_m_C1);(NDUF_C2)
1
49
49
49
49
42
850
100
14
100
(NmrA);(Oxidored_q6)
1
35
35
38
38
82
679
100
6
92
(NmrA);(zf-CHCC)
1
35
35
38
38
82
514
100
6
92
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)
1
32
62
33
71
28
876
100
71
97
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)
1
38
38
38
38
46
722
100
8
100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)
1
32
32
35
35
84
493
100
9
91
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
37
37
38
38
50
680
100
8
97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)
1
38
38
38
38
54
864
100
8
100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)
1
38
38
38
38
54
1306
100
8
100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)
1
35
35
38
38
32
569
100
9
92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)
1
38
38
38
38
38
1952
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)
1
36
36
38
38
54
523
100
8
95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)
1
38
38
38
38
39
1197
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)
1
38
38
38
38
34
662
100
8
100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)
1
37
37
38
38
31
470
100
8
97
(Oxidored_q2);(Proton_antipo_M)
1
22
27
22
27
5
1531
100
44
100
(Oxidored_q3);(Proton_antipo_M)
1
20
25
20
25
0
1098
100
48
100
(CR6_interact);(MRP-L51)
1
30
33
30
39
76
423
100
12
100
(CR6_interact);(Ribosomal_L27A)
1
29
32
29
38
76
1065
100
12
100
(CR6_interact);(Ribosomal_L28)
1
29
32
29
38
76
384
100
12
100
(CR6_interact);(Ribosomal_L33)
1
29
32
29
38
76
481
100
12
100
(CR6_interact);(Ribosomal_L4)
1
29
32
29
38
76
459
100
12
100
(Img2);(MRP-63)
1
30
33
30
39
72
594
100
12
100
(Img2);(Ribosomal_L27A)
1
29
32
34
43
87
1377
100
12
85
(Img2);(Ribosomal_L4)
1
39
42
44
53
4
824
98
12
89
(KOW)_(ribosomal_L24);(MRP-L27)
1
30
33
30
39
22
1353
100
12
100
(KOW)_(ribosomal_L24);(MRP-L47)
1
36
39
36
45
7
1700
100
13
100
(KOW)_(ribosomal_L24);(Ribosomal_L23)
1
31
34
36
45
81
786
100
15
86
(L51_S25_CI-B8);(MRP-63)
1
30
33
30
39
72
370
100
12
100
(L51_S25_CI-B8);(MRP-S32)
1
30
33
30
39
8
669
100
15
100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)
1
30
33
34
43
88
1492
100
15
88
(L51_S25_CI-B8);(Ribosomal_L13)
1
39
42
43
52
18
783
98
12
91
(L51_S25_CI-B8);(Ribosomal_L20)
1
31
34
31
40
22
595
100
12
100
(L51_S25_CI-B8);(Ribosomal_L21p)
1
41
44
45
54
0
1286
98
11
91
(L51_S25_CI-B8);(Ribosomal_L50)
1
30
33
39
48
80
687
100
15
77
(Mitoc_L55);(MRP-L28)
1
28
31
28
37
70
830
100
13
100
(Mitoc_L55);(MRP-L46)
1
28
31
28
37
70
1214
100
13
100
(Mitoc_L55);(Ribosomal_S10)
1
28
31
28
37
70
923
100
13
100
(MRP_L53);(Ribosomal_L10)
1
29
32
29
38
85
844
100
12
100
(MRP_L53);(Ribosomal_S18)
1
30
33
30
39
85
509
100
12
100
(MRP-63);(MRPL52)
1
30
33
30
39
72
385
100
12
100
(MRP-63);(Ribosomal_L10)
1
29
32
29
38
72
497
100
12
100
(MRP-63);(Ribosomal_L16)
1
29
32
29
38
72
323
100
12
100
(MRP-63);(Ribosomal_L27A)
1
29
32
29
38
72
521
100
12
100
(MRP-63);(Ribosomal_L30)
1
29
32
29
38
72
1222
100
12
100
(MRP-63);(Ribosomal_S18)
1
24
24
24
30
72
250
100
4
100
(MRP-L27);(MRP-L47)
1
36
39
40
49
22
1651
100
13
90
(MRP-L27);(Ribosomal_L23)
1
38
41
38
47
5
1457
98
12
100
(MRP-L27);(Ribosomal_L28)
1
29
32
29
38
77
503
100
12
100
(MRP-L27);(Ribosomal_L34)
1
38
41
38
47
22
438
98
12
100
(MRP-L28);(MRP-L46)
1
35
38
35
44
11
2236
100
16
100
(MRP-L28);(Ribosomal_S10)
1
30
33
30
39
72
1740
100
15
100
(MRP-L46);(Ribosomal_S10)
1
30
33
30
39
76
361
100
15
100
(MRP-L47);(MRP-L51)
1
29
32
29
38
82
234
100
12
100
(MRP-L47);(PDCD9)
1
29
32
29
38
83
561
100
12
100
(MRP-L47);(Ribosomal_L23)
1
45
48
45
54
2
1785
98
12
100
(MRP-L47);(Ribosomal_L28)
1
30
33
30
39
83
451
100
15
100
(MRP-L47);(Ribosomal_L34)
1
30
33
30
39
83
518
100
15
100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)
1
30
33
30
39
82
368
100
12
100
(MRP-L51);(Ribosomal_L27A)
1
29
32
29
38
82
290
100
12
100
(MRP-L51);(Ribosomal_L28)
1
29
32
29
38
82
326
100
12
100
(MRP-L51);(Ribosomal_L35p)
1
29
32
29
38
80
399
100
12
100
(MRP-L51);(Ribosomal_L4)
1
29
32
29
38
82
1829
100
12
100
(MRPL52);(Ribosomal_L20)
1
29
32
29
38
81
394
100
12
100
(MRPL52);(Ribosomal_L21p)
1
31
34
31
40
7
668
100
12
100
(MRPL52);(Ribosomal_L30)
1
29
32
31
40
81
1056
100
12
94
(MRP-S32);(Ribonucleas_3_3)_(dsrm)
1
29
32
29
38
69
680
100
16
100
(MRP-S32);(Ribosomal_L13)
1
29
32
29
38
30
294
100
12
100
(MRP-S32);(Ribosomal_L20)
1
28
31
28
37
69
866
100
13
100
(MRP-S32);(Ribosomal_L21p)
1
28
31
28
37
69
809
100
13
100
(MRP-S32);(Ribosomal_L22)
1
29
32
29
38
69
413
100
12
100
(PBP);(RF-1)
1
31
34
31
40
77
958
100
12
100
(PBP);(Ribosomal_L18p)
1
30
33
30
39
88
2744
100
12
100
(PBP);(Ribosomal_L27)
1
29
32
36
45
87
1811
100
12
81
(PBP);(Ribosomal_L27A)
1
29
32
34
43
88
255
100
12
85
(PBP);(Ribosomal_L35p)
1
29
32
29
38
80
1116
100
12
100
(PBP);(Ribosomal_S10)
1
30
33
30
39
76
644
100
12
100
(PDCD9);(Ribosomal_L17)
1
27
30
27
36
82
368
100
13
100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)
1
29
32
29
38
85
777
100
12
100
(PDCD9);(Ribosomal_L23)
1
29
32
29
38
81
532
100
12
100
(PDCD9);(Ribosomal_L28)
1
29
32
29
38
83
825
100
12
100
(RF-1);(Ribosomal_L18p)
1
28
31
28
37
77
446
100
13
100
(RF-1);(Ribosomal_L27A)
1
30
33
30
39
77
1553
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)
1
33
36
33
42
14
807
97
11
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)
1
29
32
29
38
87
374
100
12
100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)
1
29
32
29
38
77
319
100
12
100
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)
1
53
53
91
123
3
276
100
17
58
(Ribosomal_L10);(Ribosomal_L16)
1
32
35
32
41
85
1231
100
14
100
(Ribosomal_L10);(Ribosomal_S18)
1
29
32
30
39
85
236
100
9
97
(Ribosomal_L13);(Ribosomal_L22)
1
43
46
48
57
21
523
98
13
90
(Ribosomal_L13);(Ribosomal_L3)
1
205
278
217
290
3
367
92
7
94
(Ribosomal_L13);(Ribosomal_S18)
1
30
33
30
39
85
2360
100
12
100
(Ribosomal_L14);(Ribosomal_L3)
1
218
291
226
317
0
436
92
9
96
(Ribosomal_L16);(Ribosomal_L30)
1
31
34
31
40
81
427
100
15
100
(Ribosomal_L16);(Ribosomal_L37)
1
27
29
28
37
20
393
100
10
96
(Ribosomal_L17);(Ribosomal_L19)
1
29
32
29
38
80
637
100
16
100
(Ribosomal_L17);(Ribosomal_L3)
1
33
36
38
65
29
597
100
14
87
(Ribosomal_L17);(TGS)_(tRNA_SAD)
1
27
30
27
36
89
746
100
13
100
(Ribosomal_L18p);(Ribosomal_L27)
1
31
34
41
51
6
1100
100
15
76
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)
1
69
69
124
168
40
237
100
20
56
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)
1
29
29
49
80
0
314
97
3
59
(Ribosomal_L20);(Ribosomal_L22)
1
31
34
31
40
86
273
100
15
100
(Ribosomal_L21p);(Ribosomal_S18)
1
30
33
30
39
77
526
100
12
100
(Ribosomal_L22);(TGS)_(tRNA_SAD)
1
30
33
30
39
78
357
100
12
100
(Ribosomal_L27);(Ribosomal_S10)
1
30
33
30
39
76
395
100
12
100
(Ribosomal_L3);(TGS)_(tRNA_SAD)
1
30
33
30
39
82
575
100
12
100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)
1
29
32
29
38
85
256
100
12
100
(Ribosomal_L4);(Ribosomal_L50)
1
29
32
38
47
80
1054
100
12
76
(Ribosomal_S10);(Ribosomal_S9)
1
45
45
62
93
13
391
100
4
73
(Ribosomal_S11);(Ribosomal_S21)
1
277
302
290
376
0
1076
100
14
96
(Ribosomal_S15);(Ribosomal_S17)
1
29
29
38
44
2
363
100
7
76
(Ribosomal_S15);(Ribosomal_S6)
1
31
31
41
47
2
365
100
6
76
(Ribosomal_S16);(Ribosomal_S18)
1
29
29
29
35
84
568
100
7
100
(Ribosomal_S18);(Ribosomal_S21)
1
127
151
208
259
0
248
99
13
61
(Ribosomal_S18);(Ribosomal_S21)
2
29
29
208
259
1
626
100
7
14
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)
1
29
29
29
35
82
588
100
7
100
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)
1
84
97
102
133
6
516
77
10
82
(Ribosomal_S2);(Ribosomal_S9)
1
38
38
38
44
24
1148
97
5
100
(7tm_1);(G-alpha)
1
54
54
63
63
5
1221
100
6
86
(G-alpha);(V-set)_(V-set)
1
48
48
48
48
43
540
100
2
100
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
105
106
105
130
6
1299
100
7
100
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
114
123
114
148
0
2084
100
16
100
(GP120);(ig)_(C2-set)
1
32
42
32
42
21
1039
100
33
100
(Ribosomal_L16);(Ribosomal_L25p)
1
271
299
271
351
21
389
100
14
100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)
1
203
216
203
216
0
765
90
12
100
(V-set)_(C1-set);(V-set_2)_(C1-set)
1
282
328
283
331
11
1615
100
87
100
(V-set)_(C1-set);(V-set_2)_(C1-set)
2
24
32
283
331
14
366
0
0
8
(V-set)_(C1-set);(V-set_2)_(C1-set)
3
21
22
283
331
16
360
0
0
7
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)
1
20
44
21
57
11
1678
100
75
95
(Proteasome);(Proteasome)_(Pr_beta_C)
1
83
361
87
484
3
1157
100
75
95
(Proteasome);(Proteasome)_(Pr_beta_C)
2
70
247
87
484
13
862
100
75
80
(Proteasome);(Proteasome)_(Pr_beta_C)
3
69
289
87
484
13
1376
100
73
79
(Proteasome);(Proteasome_A_N)_(Proteasome)
1
110
401
110
517
2
490
100
68
100
(Proteasome);(Proteasome_A_N)_(Proteasome)
2
110
401
110
517
2
428
100
67
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
1
87
264
87
484
4
617
100
69
100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)
2
87
362
87
484
8
603
100
72
100
(LRR_9);(RRM_1)
1
23
23
23
23
24
549
100
13
100
(MMS1_N)_(CPSF_A);(SF3b10)
1
25
29
25
29
22
1693
100
38
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)
1
137
178
143
188
41
988
100
38
96
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)
1
171
184
171
184
0
770
88
9
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)
1
175
188
175
188
3
941
88
10
100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)
1
127
140
128
141
5
462
84
12
99
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)
1
101
114
101
114
2
491
82
15
100
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)
1
194
207
196
209
4
664
89
9
99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
1
193
206
193
206
3
509
89
9
100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)
2
144
157
193
206
2
277
86
11
75
(Ribosomal_L13);(Ribosomal_L18A)
1
193
206
193
206
22
692
89
9
100
(Ribosomal_L13);(Ribosomal_L35Ae)
1
151
154
162
175
2
239
92
11
93
(Ribosomal_L13e);(Ribosomal_L15e)
1
195
208
195
208
24
509
89
10
100
(Ribosomal_L13e);(Ribosomal_L18)
1
156
169
163
176
5
234
87
9
96
(Ribosomal_L13e);(Ribosomal_L27A)
1
195
208
195
208
2
1458
89
9
100
(Ribosomal_L13e);(Ribosomal_L29)
1
201
214
201
214
2
910
90
9
100
(Ribosomal_L13e);(Ribosomal_L36e)
1
191
204
191
204
4
642
89
9
100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
106
106
113
113
31
220
96
7
94
(Ribosomal_L14);(Ribosomal_L24e)
1
206
280
206
280
0
526
92
9
100
(Ribosomal_L15e);(Ribosomal_L29)
1
197
210
197
210
7
355
90
10
100
(Ribosomal_L15e);(Ribosomal_L36e)
1
196
209
196
209
7
528
89
10
100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
193
206
195
208
37
268
89
10
99
(Ribosomal_L15e);(Ribosomal_L7Ae)
1
180
253
180
253
2
941
91
9
100
(Ribosomal_L18);(Ribosomal_L27A)
1
197
210
201
214
3
864
90
9
98
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)
1
176
189
177
190
5
257
88
9
99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
201
214
201
214
0
1115
90
10
100
(Ribosomal_L18A);(Ribosomal_L21e)
1
193
206
193
206
0
888
89
9
100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)
1
198
211
198
211
22
476
90
10
100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)
1
93
106
95
108
35
243
80
14
98
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)
1
194
207
197
210
5
310
89
10
98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)
1
208
280
208
281
0
1255
92
7
100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)
1
151
164
151
164
1
299
87
11
100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)
1
194
207
194
207
0
598
89
9
100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
186
199
186
199
0
857
89
9
100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)
1
168
181
176
189
2
222
88
10
95
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)
1
149
162
151
164
9
372
86
11
99
(Ribosomal_L24e);(Ribosomal_L3)
1
193
206
193
206
0
582
89
11
100
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)
1
30
30
33
33
47
219
90
17
91
(Ribosomal_L27A);(Ribosomal_L36e)
1
155
168
163
176
4
240
87
9
95
(Ribosomal_L29);(Ribosomal_L37e)
1
53
53
61
61
28
215
100
4
87
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)
1
192
205
192
205
11
1001
89
10
100
(Ribosomal_L32e);(Ribosomal_L6e)
1
95
108
95
108
2
511
81
15
100
(Ribosomal_L34e);(Ribosomal_L7Ae)
1
194
207
196
209
4
258
89
9
99
(Ribosomal_L35Ae);(Ribosomal_L6e)
1
108
121
108
121
2
859
83
15
100
(Ribosomal_L36e);(Ribosomal_L7Ae)
1
161
174
161
174
4
304
87
11
100
(Ribosomal_L37e);(Ribosomal_L39)
1
132
145
140
153
21
225
85
11
94
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)
1
180
193
183
196
39
241
89
10
98
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)
1
203
216
208
221
2
492
89
7
98
(KH_2)_(Ribosomal_S3_C);(S10_plectin)
1
198
211
198
211
0
876
89
6
100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)
1
176
189
180
193
3
488
88
6
98
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)
1
216
229
216
229
2
467
90
10
100
(Ribosom_S12_S23);(Ribosomal_S30)
1
166
179
167
180
10
444
87
8
99
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)
1
75
75
91
91
29
355
99
0
82
(Ribosomal_L7Ae);(Ribosomal_S27)
1
76
89
82
95
3
538
75
10
93
(Ribosomal_L7Ae);(S10_plectin)
1
23
23
30
30
20
284
91
4
77
(Ribosomal_S11);(Ribosomal_S26e)
1
193
206
193
206
2
1107
89
6
100
(Ribosomal_S11);(Ribosomal_S3Ae)
1
237
250
239
252
0
859
91
8
99
(Ribosomal_S13);(Ribosomal_S19e)
1
210
223
215
228
4
440
90
9
98
(Ribosomal_S13);(Ribosomal_S25)
1
195
208
197
210
0
464
89
8
99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)
1
21
21
22
22
34
252
100
14
95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)
1
235
248
238
251
0
715
91
8
99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)
1
66
66
80
80
2
234
98
12
82
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)
1
59
61
72
74
66
209
82
11
82
(Ribosomal_S14);(Ribosomal_S19)
1
245
273
267
350
6
336
100
14
92
(Ribosomal_S14);(S10_plectin)
1
186
199
189
202
0
294
88
6
98
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)
1
227
240
227
240
3
720
90
8
100
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)
1
187
200
187
200
10
529
89
8
100
(Ribosomal_S19e);(Ribosomal_S9)
1
135
135
145
145
2
281
99
11
93
(Ribosomal_S21e);(Ribosomal_S27e)
1
78
91
79
92
36
427
77
9
99
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)
1
207
220
207
220
2
1316
90
8
100
(Ribosomal_S21e);(Ribosomal_S8)
1
176
189
178
191
3
266
88
8
99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)
1
219
232
219
232
0
536
91
9
100
(Ribosomal_S24e);(S4)
1
104
117
113
126
30
227
82
11
92
(Ribosomal_S25);(Ribosomal_S7)
1
205
218
205
218
2
598
89
8
100
(Ribosomal_S26e);(Ribosomal_S3Ae)
1
131
144
142
155
6
265
84
6
92
(Ribosomal_S27e);(Ribosomal_S7e)
1
79
79
87
87
2
332
97
6
91
(Ribosomal_S27e);(Ribosomal_S8)
1
224
237
224
237
0
477
90
8
100
(Ribosomal_S28e);(Ribosomal_S7)
1
247
260
247
260
0
1106
91
8
100
(Ribosomal_S30);(S4)
1
163
176
163
176
1
506
87
10
100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)
1
194
207
201
214
4
360
89
9
97
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )
1
199
212
201
214
0
321
90
8
99
(Ribosomal_S7e);(Ribosomal_S8)
1
232
245
232
245
3
470
91
8
100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)
1
180
193
181
194
10
300
89
7
99
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)
1
184
197
184
197
0
368
89
9
100
(Ribosomal_S17e);(Ribosomal_S2)
1
74
87
74
87
2
955
75
8
100
(Ribosomal_S2);(Ribosomal_S21e)
1
75
88
75
88
0
1506
75
9
100
(Ribosomal_L16);(Ribosomal_L21e)
1
62
75
73
86
4
215
71
7
85
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)
1
135
148
142
155
3
260
85
5
95
(Ribosomal_L21e);(Ribosomal_L29e)
1
179
192
179
192
0
479
89
9
100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)
1
89
102
89
102
32
660
78
9
100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)
1
41
41
54
54
57
229
100
15
76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)
1
29
42
29
42
59
265
50
5
100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
1
132
162
151
190
4
608
100
65
87
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
2
124
152
151
190
3
276
100
65
82
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)
3
114
127
151
190
3
377
100
67
75
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
1
128
157
143
182
5
503
100
65
90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
2
127
156
143
182
12
579
100
65
89
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)
3
117
147
143
182
5
552
100
69
82
(ATP-synt);(ATP-synt_DE_N)
1
97
98
101
110
2
1438
100
61
96
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)
1
161
192
161
201
18
2092
100
59
100
(ATP-synt_C);(ATP-synt_DE_N)
1
83
83
92
100
2
272
100
67
90
(ATP-synt_C);(ATP-synt_DE_N)
2
72
72
92
100
2
254
100
68
78
(ATP-synt_C);(ATP-synt_DE_N)
3
45
45
92
100
25
222
100
91
49
(DNA_RNApol_7kD);(RNA_pol_N)
1
24
28
54
109
21
201
100
68
44
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
79
205
79
213
21
1007
100
53
100
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
47
135
52
184
49
364
100
50
90
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
67
185
67
201
42
1687
99
70
100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
67
193
67
201
35
963
99
45
100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
75
199
77
211
21
452
99
62
97
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)
1
67
193
67
201
45
1534
99
69
100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
77
203
77
211
25
1330
100
52
100
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
78
204
79
213
38
1529
100
70
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
68
194
68
202
52
9014
99
55
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)
1
68
194
68
202
5
2123
99
69
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
67
191
68
202
4
1901
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
67
193
68
202
35
1525
99
68
99
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)
1
60
115
61
116
5
591
99
48
98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)
1
23
26
23
26
33
2087
100
19
100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)
1
21
67
36
89
51
289
99
45
58
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)
1
23
26
23
26
33
1743
100
15
100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)
1
75
129
76
132
1
2003
99
47
99
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)
1
71
124
72
128
4
432
98
44
99
(F_actin_cap_B);(F-actin_cap_A)
1
24
28
24
28
10
3543
100
75
100
(Histone);(Histone)_(Histone_H2A_C)
1
205
352
205
460
6
2454
100
61
100
(Histone);(Histone)_(Histone_H2A_C)
2
181
249
205
460
39
661
100
49
88
(Histone);(TAF)
1
215
329
215
477
12
2435
100
57
100
(Histone);(TAF)
2
186
250
215
477
9
516
100
47
87
(Histone);(TAF)
3
185
254
215
477
65
262
100
48
86
(Histone)_(Histone_H2A_C);(TAF)
1
185
286
186
440
11
410
100
52
99
(Adaptin_N);(Clat_adaptor_s)
1
25
27
27
29
10
2576
100
63
93
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)
1
20
20
20
26
15
2471
100
0
100
(ubiquitin);(UQ_con)
1
32
32
70
81
23
804
100
56
46
(Kinesin);(Tubulin)_(Tubulin_C)
1
47
47
75
75
5
673
100
28
63
(Kinesin);(Tubulin)_(Tubulin_C)
2
28
28
75
75
23
743
96
39
37
(Skp1_POZ);(ubiquitin)
1
36
77
36
78
2
1089
100
81
100
(Thrombin_light);(Trypsin)
1
99
383
99
551
11
1163
100
99
100
(Thrombin_light);(Trypsin)
2
24
45
99
551
75
264
2
13
24
(ubiquitin);(UCH)
1
25
33
28
37
3
1689
100
100
89
(MHC_I)_(C1-set);(V-set)_(C1-set)
1
84
162
105
204
18
459
97
48
80
(MHC_I)_(C1-set);(V-set)_(DUF1968)
1
97
192
104
203
36
486
96
47
93
(V-set)_(C1-set);(V-set)_(DUF1968)
1
255
450
255
461
7
2051
100
95
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)
1
232
305
232
307
9
1535
100
50
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)
1
46
71
46
73
47
2762
100
45
100
(ATP-synt_A);(ATP-synt_C)
1
77
77
109
117
3
364
100
42
71
(ATP-synt_A);(ATP-synt_C)
2
53
53
109
117
3
607
100
8
49
(ATP-synt_A);(ATP-synt_C)
3
52
52
109
117
3
437
100
10
48
(ATP-synt_A);(ATP-synt_C)
4
38
38
109
117
12
580
100
82
35
(ATP-synt_A);(ATP-synt_C)
5
33
33
109
117
15
494
100
91
30
(ATP-synt_A);(ATP-synt_C)
6
24
24
109
117
15
289
100
17
22
(ATP_synt_H);(V_ATPase_I)
1
24
24
24
24
22
1968
100
0
100
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
1
24
27
28
34
26
469
100
30
86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
2
24
27
28
34
26
560
100
33
86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)
3
22
25
28
34
26
332
100
36
79
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
1
22
22
25
25
23
897
100
0
88
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
2
22
22
25
25
23
427
100
0
88
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)
3
20
20
25
25
24
628
100
0
80
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
1
30
30
30
30
31
611
100
0
100
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
2
25
25
30
30
47
465
100
0
83
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)
3
25
25
30
30
42
327
100
0
83
(ATP-synt_D);(ATP-synt_F)
1
43
47
44
50
10
1500
100
30
98
(ATP-synt_D);(vATP-synt_AC39)
1
30
30
34
34
12
1148
100
17
88
(ATP-synt_S1);(vATP-synt_AC39)
1
22
22
25
25
23
469
100
0
88
(V-ATPase_G);(vATP-synt_E)
1
30
31
30
31
31
1679
100
6
100
(ATP-synt_A);(ATP-synt_B)
1
38
38
41
49
4
1483
100
3
93
(Fer4_7);(PsaA_PsaB)
1
31
36
31
36
0
805
100
44
100
(Fer4_7);(PsaA_PsaB)
2
31
36
31
36
3
401
100
42
100
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)
1
29
40
77
92
8
568
2
5
38
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)
1
48
48
51
51
23
1457
100
21
94
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(V-set)_(C1-set)
1
20
27
46
54
9
556
0
0
43
(Cullin)_(Cullin_Nedd8);(zf-rbx1)
1
20
20
20
20
20
1960
100
80
100
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)
1
23
26
23
26
16
2264
100
27
100
(GP120);(GP41)
1
119
137
119
143
19
2434
99
34
100
(GP120);(GP41)
2
44
49
119
143
19
229
90
16
37
(GP120);(V-set)_(C1-set)
1
52
71
224
288
16
268
100
54
23
(GP120);(V-set)_(C1-set)
2
33
43
224
288
12
911
100
44
15
(GP120);(V-set)_(C1-set)
3
28
38
224
288
27
302
95
16
12
(GP120);(V-set)_(C1-set)
4
27
39
224
288
19
288
95
15
12
(Pico_P1A);(Rhv)
1
121
200
124
212
3
1052
100
46
98
(Pico_P1A);(Rhv)
2
117
196
124
212
10
814
100
42
94
(Pico_P1A);(Rhv)
3
108
175
124
212
10
515
100
41
87
(C1-set);(MHC_I_3)_(C1-set)
1
47
145
47
150
11
1252
100
98
100
(G-alpha);(HRM)_(7tm_2)
1
43
43
44
68
2
1057
100
0
98
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)
1
20
20
25
49
25
259
100
0
80
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
1
47
108
47
110
30
1840
100
78
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)
2
41
101
47
110
30
272
100
81
87
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)
1
29
73
38
103
10
213
100
67
76
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
1
147
198
147
199
8
2628
100
98
100
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)
2
21
25
147
199
56
379
12
12
14
(NiFeSe_Hases);(Oxidored_q6)_(NiFe_hyd_SSU_C)
1
21
87
26
123
11
3641
100
94
81
(Cyclin_N)_(Cyclin_C);(Pkinase)
1
39
154
39
173
3
1560
99
92
100
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)
1
37
41
39
51
4
341
100
0
95
(Fer4_21);(PsaA_PsaB)
1
21
23
21
27
74
402
100
17
100
(Fer4_21);(PsaA_PsaB)
2
21
27
21
27
0
831
100
30
100
(Fer4_21);(PsaD)
1
21
23
21
27
21
1453
100
17
100
(Fer4_21);(PSI_PsaE)
1
21
24
21
27
53
495
100
17
100
(PsaA_PsaB);(PsaD)
1
52
58
52
63
5
793
100
33
100
(PsaA_PsaB);(PsaD)
2
52
59
52
63
5
694
100
36
100
(PsaA_PsaB);(PsaL)
1
48
55
48
59
21
540
100
33
100
(PsaA_PsaB);(PsaL)
2
39
45
48
59
21
360
100
33
81
(PsaA_PsaB);(PsaM)
1
32
37
32
37
34
957
100
38
100
(PsaA_PsaB);(PSI_8)
1
48
58
48
59
0
747
100
36
100
(PsaA_PsaB);(PSI_PsaE)
1
48
55
51
62
0
401
100
27
94
(PsaA_PsaB);(PSI_PsaE)
2
46
54
51
62
45
283
100
26
90
(PsaA_PsaB);(PSI_PsaF)
1
47
52
48
59
21
933
100
31
98
(PsaA_PsaB);(PSI_PsaF)
2
47
53
48
59
21
1061
100
34
98
(PsaA_PsaB);(PSI_PsaJ)
1
45
52
45
53
27
351
100
37
100
(PsaD);(PsaL)
1
36
43
37
48
5
468
100
40
97
(PsaL);(PSI_8)
1
34
39
36
41
0
258
100
36
94
(PsaM);(PSI_8)
1
24
29
26
31
0
227
100
45
92
(PSI_PsaE);(PSI_PsaF)
1
40
43
42
47
0
260
100
28
95
(PSI_PsaF);(PSI_PsaJ)
1
47
53
48
59
9
700
100
32
98
(Fer4_7);(PsaD)
1
31
36
31
36
2
1404
100
44
100
(Fer4_7);(PSI_PsaE)
1
31
36
31
36
40
534
100
31
100
(PsaA_PsaB);(PSI_PSAK)
1
42
50
44
55
3
609
100
26
95
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)
1
32
80
32
87
7
761
100
38
100
(Cytochrom_B559);(Photo_RC)
1
32
75
32
87
0
475
100
37
100
(Cytochrom_B559);(PsbJ)
1
27
75
27
82
7
385
100
25
100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
1
31
68
31
86
62
1335
100
38
100
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)
2
30
69
31
86
62
311
100
42
97
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)
1
26
68
26
81
0
385
100
26
100
(MSP);(Photo_RC)
1
28
62
28
83
35
707
100
24
100
(MSP);(Photo_RC)
2
27
71
28
83
36
671
100
27
96
(MSP);(PSII)
1
28
62
28
83
35
1313
100
26
100
(MSP);(PSII)
2
25
69
28
83
36
771
100
25
89
(MSP);(PSII)
3
24
67
28
83
39
405
84
7
86
(Photo_RC);(PsbH)
1
30
74
30
85
55
270
100
32
100
(Photo_RC);(PsbI)
1
30
69
30
85
12
868
100
29
100
(Photo_RC);(PsbL)
1
30
74
30
85
68
400
100
23
100
(Photo_RC);(PsbL)
2
27
66
30
85
76
260
100
33
90
(Photo_RC);(PsbT)
1
30
69
30
85
40
512
100
32
100
(Photo_RC);(PsbT)
2
26
69
30
85
40
220
100
25
87
(Photo_RC);(PsbX)
1
29
72
29
84
3
612
100
28
100
(Photo_RC);(PSII)
1
32
76
32
87
9
2950
100
43
100
(Photo_RC);(PSII)
2
31
73
32
87
16
818
100
49
97
(PsbH);(PsbX)
1
28
81
28
83
3
304
100
25
100
(PsbH);(PSII)
1
30
84
30
85
55
1909
100
36
100
(PsbI);(PSII)
1
30
64
30
85
64
445
100
31
100
(PsbK);(PSII)
1
31
74
31
86
17
813
100
32
100
(PsbK);(PSII_Ycf12)
1
21
64
21
76
4
506
100
22
100
(PsbK);(Ycf9)
1
28
73
28
83
6
269
100
21
100
(PsbL);(PsbM)
1
29
84
29
84
4
815
100
37
100
(PsbL);(PsbT)
1
30
85
30
85
12
596
100
38
100
(PsbL);(PSII)
1
30
79
30
85
12
605
100
29
100
(PSII);(Ycf9)
1
29
71
29
84
6
439
100
20
100
(PSII_Ycf12);(Ycf9)
1
21
64
21
76
0
401
100
20
100
(Cytochrom_C550);(Photo_RC)
1
21
56
21
76
54
578
100
50
100
(Cytochrom_C550);(PsbU)
1
20
57
20
75
31
650
100
32
100
(Cytochrom_C550);(PSII)
1
22
56
22
77
35
927
100
48
100
(MSP);(PsbU)
1
20
56
20
75
31
520
100
25
100
(PsbU);(PSII)
1
20
53
20
75
31
433
100
26
100
(PsbU);(PSII)
2
20
54
20
75
31
469
100
31
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)
1
36
67
36
69
30
7998
100
61
100
(CoV_NSP7);(CoV_NSP8)
1
24
27
33
100
11
1314
100
37
73
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)
1
26
27
26
89
11
793
100
30
100
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)
1
27
28
27
90
13
2378
100
29
100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)
1
28
53
39
64
84
929
100
40
72
(Rhv);(VP4_2)
1
22
27
28
39
13
564
100
52
79
(Photo_RC);(PRCH)_(PRC)
1
25
144
25
155
35
1623
100
92
100
(Photo_RC);(PRCH)_(PRC)
2
25
144
25
155
35
2683
100
94
100
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)
1
38
55
48
69
51
301
96
25
79
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)
1
28
38
35
49
51
312
95
34
80
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)
1
39
43
46
59
10
359
98
28
85
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)
1
20
21
20
21
23
1819
100
48
100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
70
75
70
75
22
920
100
73
100
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
1
33
37
59
63
51
1864
100
84
56
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)
2
26
26
59
63
52
1191
100
54
44
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)
1
26
26
26
26
33
643
100
54
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_Rpb5_C)
1
62
66
62
66
28
2390
100
65
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)
1
62
66
62
66
28
1682
100
65
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
27
27
27
27
44
1251
100
56
100
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
29
29
29
29
30
1739
100
59
100
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)
1
27
27
27
27
44
427
100
56
100
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)
1
26
27
26
27
23
953
100
59
100
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)
1
20
21
26
27
26
248
100
48
77
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_p ol_Rpb2_7)
1
26
27
26
27
37
1581
100
59
100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_6)_(RNA_pol_Rpb2_7)
1
22
23
23
24
36
8676
100
65
96
(Plug_translocon)_(SecY);(Sec61_beta)
1
36
38
36
38
0
990
95
32
100
(Plug_translocon)_(SecY);(SecE)
1
42
44
42
44
3
1648
95
32
100
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)
1
24
25
24
25
28
1210
100
32
100
(Filo_glycop);(TLV_coat)
1
31
50
31
51
12
2470
98
70
100
(Filo_glycop);(TLV_coat)
2
31
50
31
51
12
410
88
68
100
(Filo_glycop);(TLV_coat)
3
31
50
31
51
13
447
88
68
100
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
1
47
47
48
48
8
1122
100
2
98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)
2
31
31
48
48
14
917
100
0
65
(Flu_PA);(Flu_PB1)
1
42
51
42
52
3
7846
100
69
100
(Flu_PA);(Flu_PB2)
1
38
47
40
50
21
1820
100
70
95
(Flu_PB1);(Flu_PB2)
1
40
51
40
51
10
5907
100
69
100
(Kunitz_BPTI);(Trypsin)
1
40
93
43
98
3
672
100
97
93