PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7DR4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	84.6	H1	13	H1-13-1	9	KASGYTFTTYWIQ	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H2	10	H2-10-1	12	AIYPGDGDTR	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARSLATRGFYAMDY	BBBABBLBBBBBAB
A	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L1	11	L1-11-2	7	ITSTDIDDDMN	BBABBALLBBB
B	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
B	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L3	9	L3-9-cis7-1	13	LQSDNLPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L4	6	L4-6-1	21	GYGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	84.6	H1	13	H1-13-1	11	KASGYTFTTYWIQ	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H2	10	H2-10-1	9	AIYPGDGDTR	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARSLATRGFYAMDY	BBBABBLEBBBBAB
C	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L1	11	L1-11-*	-1	ITSTDIDDDMN	BBABBBAABBB
D	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
D	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L3	9	L3-9-cis7-1	12	LQSDNLPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L4	6	L4-6-1	19	GYGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	84.6	H1	13	H1-13-1	11	KASGYTFTTYWIQ	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H2	10	H2-10-1	9	AIYPGDGDTR	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARSLATRGFYAMDY	BBBABBLBBBBBAB
E	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	12	ADKSSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L1	11	L1-11-*	-1	ITSTDIDDDMN	BBABBBAABBB
F	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
F	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L3	9	L3-9-cis7-1	9	LQSDNLPYT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L4	6	L4-6-1	17	GYGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	84.6	H1	13	H1-13-1	11	KASGYTFTTYWIQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H2	10	H2-10-1	13	AIYPGDGDTR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	50.0	H3	14	H3-14-*	-1	ARSLATRGFYAMDY	BBBABBLBBBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-87*01	91.8	Mo_IGHV1-87*01	100.0	H4	8	H4-8-1	7	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L1	11	L1-11-2	9	ITSTDIDDDMN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L2	8	L2-8-*	-1	SEGNTLRP	BBLLBBBB
L	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L3	9	L3-9-cis7-1	10	LQSDNLPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV17-121*01	94.2	Mo_IGKV17-121*01	100.0	L4	6	L4-6-1	19	GYGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024