PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6EWB

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	9	TATGYTFITYWIQ	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	90.0	H2	10	H2-10-*	-1	ETLPGSGSTN	BBBBLBABBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARIGRSNDY	BBBBAABBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	8	ADTSSNTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	5	SASSSVDYMH	BBABBBABBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	8	YDTYKLAS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	13	QQWSSNPLT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	6	GSGTSY	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	9	TATGYTFITYWIQ	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	90.0	H2	10	H2-10-3	17	ETLPGSGSTN	BBBBLALBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARIGRSNDY	BBBBAABBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	9	TATGYTFITYWIQ	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	90.0	H2	10	H2-10-*	-1	ETLPGSGSTN	BBBBLBABBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARIGRSNDY	BBBBAABBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	5	SASSSVDYMH	BBABBBABBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	8	YDTYKLAS	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	13	QQWSSNPLT	BBAABBbBB
I	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	6	GSGTSY	EBEABB
J	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	9	TATGYTFITYWIQ	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	90.0	H2	10	H2-10-3	16	ETLPGSGSTN	BBBBLALBBB
J	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H3	9	H3-9-*	-1	ARIGRSNDY	BBBBAABBB
J	heavy	Mus.musculus	Mo_IGHV1-9*01	97.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	7	ADTSSNTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	5	SASSSVDYMH	BBABBBABBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	7	YDTYKLAS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	13	QQWSSNPLT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	90.0	L1	10	L1-10-1	5	SASSSVDYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	8	YDTYKLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	87.5	L3	9	L3-9-cis7-1	13	QQWSSNPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-59*01	97.1	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024