PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NBW

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	90.9	L1	11	L1-11-2	6	KASQDINSYLN	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	75.0	L2	8	L2-8-1	6	YHTNRLVD	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	100.0	L3	9	L3-9-cis7-1	6	LQYDEFPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	100.0	L4	6	L4-6-1	9	GSGQDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	76.9	H1	13	H1-13-*	-1	KAPGYTFNNYWIE	BBBBBLAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	17	EILPGSGRIN	BBBBLALBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	50.0	H3	7	H3-7-*	-1	AKKYGDY	BBBEEBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	76.9	H1	13	H1-13-*	-1	KAPGYTFNNYWIE	BBBEAAAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	17	EILPGSGRIN	BBBBLALBBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	50.0	H3	7	H3-7-*	-1	AKKYGDY	BBBEEBB
H	heavy	Mus.musculus	Mo_IGHV1-9*01	86.3	Mo_IGHV1-9*01	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	90.9	L1	11	L1-11-2	6	KASQDINSYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	75.0	L2	8	L2-8-1	6	YHTNRLVD	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	100.0	L3	9	L3-9-cis7-1	6	LQYDEFPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV14-111*01	94.2	Mo_IGKV14-111*01	100.0	L4	6	L4-6-1	8	GSGQDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024