PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JOP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	75.0	L1	16	L1-16-1	7	RSSQTIlhsdgYTYLE	BBABBABBAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	62.5	L2	8	L2-8-1	4	YRVYKRFS	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	12	FQGSYVPRT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	83.3	L4	6	L4-6-1	6	GSGMDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	69.2	H1	13	H1-13-1	9	EASGYIFTEYYIH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	30.0	H2	10	H2-10-1	6	YVHPKTGDVI	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	H3	5	H3-5-*	-1	ARWDS	BBAAB
E	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	62.5	H4	8	H4-8-1	5	VNRSSNTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	69.2	H1	13	H1-13-1	8	EASGYIFTEYYIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	30.0	H2	10	H2-10-1	7	YVHPKTGDVI	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	H3	5	H3-5-*	-1	ARWDS	BBAAB
H	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	62.5	H4	8	H4-8-1	6	VNRSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	75.0	L1	16	L1-16-1	7	RSSQTIlhsdgYTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	62.5	L2	8	L2-8-1	5	YRVYKRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	12	FQGSYVPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	87.0	Mo_IGKV1-117*01	83.3	L4	6	L4-6-1	8	GSGMDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024