PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5GKR

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	92.3	H1	13	H1-13-*	-1	TVSGGSISSYFWS	BBBLBBAABEBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	100.0	H2	9	H2-9-1	9	YIYYSGSTN	BBBAALBBB
A	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	100.0	H3	10	H3-10-1	13	ARHRNWLFDY	BBBBLLBBAB
A	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	75.0	H4	8	H4-8-1	15	LHTSKNQF	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L1	14	L1-14-2	7	TGTSSDVGgYNYVS	BBBAAAAAABABBB
B	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L2	8	L2-8-1	8	YDVSKRPS	BLEABBBB
B	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	L3	10	L3-10-2	5	CSYAGSYTYV	BBBAELLBBB
B	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	92.3	H1	13	H1-13-*	-1	TVSGGSissYFWS
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	100.0	H2	9	H2-9-1	9	YIYYSGSTN	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	100.0	H3	10	H3-10-1	13	ARHRNWLFDY	BBBBLLBBAB
C	heavy	Homo.sapiens	Hu_IGHV4-59*01	95.9	Hu_IGHV4-59*01	75.0	H4	8	H4-8-1	15	LHTSKNQF	BBAAALBB
D	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L1	14	L1-14-2	7	TGTSSDVGgYNYVS	BBBAAAAAABABBB
D	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L2	8	L2-8-1	8	YDVSKRPS	BLEABBBB
D	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	88.9	L3	10	L3-10-2	5	CSYAGSYTYV	BBBAELLBBB
D	lambda	Homo.sapiens	Hu_IGLV2-11*01	98.5	Hu_IGLV2-11*01	100.0	L4	6	L4-6-2	8	KSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024