PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5DQ9

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	76.9	H1	13	H1-13-4	17	AGSGITFSGYGMS	BBBLBBABLBBBB
A	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	70.0	H2	10	H2-10-2	9	LISNGGSYAY	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H3	15	H3-15-*	-1	ARHKGLrGGTNAMDY
A	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	93.3	L1	15	L1-15-1	8	RASETVDSYgnsfMH	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	8	YRASNLES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	7	QQSNEDPRT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	8	GSRTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	76.9	H1	13	H1-13-4	17	AGSGITFSGYGMS	BBBLBBABLBBBB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	70.0	H2	10	H2-10-2	9	LISNGGSYAY	BBBAALABBB
C	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H3	15	H3-15-*	-1	ARHKGLrGGTNAMDY
C	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	93.3	L1	15	L1-15-1	9	RASETVDSYgnsfMH	BBABBABBLLBBBBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	9	YRASNLES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	7	QQSNEDPRT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	8	GSRTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	76.9	H1	13	H1-13-4	17	AGSGITFSGYGMS	BBBLBBABLBBBB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	70.0	H2	10	H2-10-2	9	LISNGGSYAY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H3	15	H3-15-*	-1	ARHKGLrGGTNAMDY
H	heavy	Mus.musculus	Mo_IGHV5-6*01	93.2	Mo_IGHV5-6*01	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	93.3	L1	15	L1-15-1	8	RASETVDSYgnsfMH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	9	YRASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	7	QQSNEDPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	8	GSRTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024