PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5CP7

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	8	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	ABAABBBA
A	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	11	WQGTHFPQT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	83.3	L4	6	L4-6-1	8	GAGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H1	14	H1-14-*	-1	TVTGYSITSgYSWH	BBBLBBAAAABBBB
B	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H2	9	H2-9-1	12	YIHYSGSTN	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H3	6	H3-6-*	-1	ARYGGY	BBAALB
B	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H4	8	H4-8-1	13	RDTSKNQF	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	10	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	ABAABBBA
C	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPQT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	83.3	L4	6	L4-6-1	11	GAGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H1	14	H1-14-*	-1	TVTGYSITSgYSWH	BBBLBBAAAABBBB
D	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H2	9	H2-9-1	14	YIHYSGSTN	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H3	6	H3-6-*	-1	ARYGGY	BBAALB
D	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H4	8	H4-8-1	17	RDTSKNQF	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	14	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	ABAABBBA
E	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-*	-1	WQGTHFPQT	BBAABBbLB
E	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	83.3	L4	6	L4-6-1	18	GAGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H1	14	H1-14-*	-1	TVTGYSITSgYSWH	BBBLBBAAAABBBB
F	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H2	9	H2-9-1	20	YIHYSGSTN	BBBAALBBB
F	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H3	6	H3-6-*	-1	ARYGGY	BBAALB
F	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L1	16	L1-16-1	12	KSSQSLldsdgKTYLN	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L2	8	L2-8-*	-1	YLVSKLDS	ABEABBBA
G	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	15	WQGTHFPQT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	94.2	Mo_IGKV1-135*01	83.3	L4	6	L4-6-1	6	GAGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H1	14	H1-14-*	-1	TVTGYSITSgYSWH	BBBLBBAAABBBBB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H2	9	H2-9-1	9	YIHYSGSTN	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H3	6	H3-6-*	-1	ARYGGY	BBAALB
H	heavy	Mus.musculus	Mo_IGHV3-1*02	93.1	Mo_IGHV3-1*02	100.0	H4	8	H4-8-1	12	RDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024