PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4K3D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	100.0	H1	13	H1-13-*	-1	TASGFSLSDKAVG	BBBEBAABABBBB
H	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	77.8	H2	9	H2-9-1	11	SIDTGGNTG	BBBAALBBB
H	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	80.0	H3	63	H3-63-*	-1	TSvhqetkkyqscpdgyrersdcsnrpacgtsdccrvsvfgnclttlpvsySYTYNYEWHVDV
H	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	100.0	H4	8	H4-8-1	6	KDNSKSQV	BBAAALBB
I	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	100.0	H1	13	H1-13-*	-1	TASGFSLSDKAVG	BBBEBAABABBBB
I	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	77.8	H2	9	H2-9-1	11	SIDTGGNTG	BBBAALBBB
I	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	80.0	H3	63	H3-63-*	-1	TSvhqetkkyqscpdgyrersdcsnrpacgtsdccrvsvfgnclttlpvsysyTYNYEWHVDV
I	heavy	Bos.taurus	Bo_IGHV1-7*02	98.6	Bo_IGHV1-7*02	100.0	H4	8	H4-8-1	6	KDNSKSQV	BBAAALBB
L	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L1	13	L1-13-*	-1	SGSSSNVGNGYVS	BBBAAAAAALBBB
L	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L2	8	L2-8-1	5	YGDTSRAS	BLLABBBB
L	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L3	11	L3-11-*	-1	ASAEDSSSNAV	BBBBLBAABBB
L	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L4	6	L4-6-2	8	RSGNTA	BBEABB
M	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L1	13	L1-13-*	-1	SGSSSNVGNGYVS	BBBAAAAAALBBB
M	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L2	8	L2-8-1	6	YGDTSRAS	BLLABBBB
M	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L3	11	L3-11-*	-1	ASAEDSSSNAV	BBBBLBAABBB
M	lambda	Bos.taurus	Bo_IGLV1-47*01	98.5	Bo_IGLV1-47*01	100.0	L4	6	L4-6-2	11	RSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024