PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4JZJ

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Mo_IGHV1-26*01	76.9	H1	13	H1-13-1	12	KGSGYSFTDYYMK	BBBLBBAAABBBB
A	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Mo_IGHV1-26*01	60.0	H2	10	H2-10-1	9	DIIPSNGATF	BBBAAALBBB
A	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Hu_IGHV5-51*02	100.0	H3	13	H3-13-*	-1	ARSHLLRASWFAY	BBBBAABAABBAB
A	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Hu_IGHV5-51*02	87.5	H4	8	H4-8-1	10	ADKSISTT	BBAAALBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	11	ESSQSLlnsgnqKNYLT	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Mo_IGKV8-19*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-*	-1	QNDYSYPYT	BBAABBaLB
B	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
H	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Mo_IGHV1-26*01	76.9	H1	13	H1-13-1	13	KGSGYSFTDYYMK	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Mo_IGHV1-26*01	60.0	H2	10	H2-10-1	11	DIIPSNGATF	BBBAAALBBB
H	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Hu_IGHV5-51*02	100.0	H3	13	H3-13-*	-1	ARSHLLRASWFAY	BBBBAABAABBAB
H	heavy	Mus.musculus	Hu_IGHV5-51*02	91.8	Hu_IGHV5-51*02	87.5	H4	8	H4-8-1	8	ADKSISTT	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Mo_IGKV8-19*01	94.1	L1	17	L1-17-1	9	ESSQSLlnsgnqKNYLT	BBABBABBAAALBBBBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Mo_IGKV8-19*01	100.0	L2	8	L2-8-1	12	YWASTRES	BLLABBBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	57.1	L3	9	L3-9-cis7-1	25	QNDYSYPYT	BBAABBbBB
L	kappa	Mus.musculus	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024