PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 4FFZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	84.6	H1	13	H1-13-1	7	KASGYTFTNWWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	70.0	H2	10	H2-10-1	9	RIDPNSDVNK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	100.0	H3	11	H3-11-*	-1	ARWFFPWYFDV	BBBBBaBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	87.5	H4	8	H4-8-1	6	VDKHSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	80.0	L1	15	L1-15-1	9	RASESVDHYgnsfIY	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L2	8	L2-8-1	4	YLASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	9	QQNNEDPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	83.3	L4	6	L4-6-1	7	GSETDF	EBEABB
Y	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	80.0	L1	15	L1-15-1	9	RASESVDHYgnsfIY	BBABBABBLLBBBBB
Y	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L2	8	L2-8-1	4	YLASNLES	BLLABBBB
Y	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	100.0	L3	9	L3-9-cis7-1	9	QQNNEDPYT	BBAABBbBB
Y	kappa	Mus.musculus	Mo_IGKV3-10*01	95.7	Mo_IGKV3-10*01	83.3	L4	6	L4-6-1	7	GSETDF	EBEABB
Z	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	84.6	H1	13	H1-13-1	7	KASGYTFTNWWMH	BBBLBBAAABBBB
Z	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	70.0	H2	10	H2-10-1	9	RIDPNSDVNK	BBBAAALBBB
Z	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	100.0	H3	11	H3-11-*	-1	ARWFFPWYFDV	BBBBBaBBBAB
Z	heavy	Mus.musculus	Mo_IGHV1-72*01	86.3	Mo_IGHV1-72*01	87.5	H4	8	H4-8-1	6	VDKHSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024