PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1RZI

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	21	RASQSISSYLN	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	17	YAASSLQS	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-2	17	QQSYSTSHT	BBAABABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBABBAEABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
B	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	17	ADEATSTT	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	22	RASQSISSYLN	BBABBAEAABB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	30	YAASSLQS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-*	-1	QQSYSTSHT	BBAABABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	26	GSGTDF	EEEABB
D	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAABBBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
D	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	20	ADEATSTT	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	21	RASQSISSYLN	BBABBAEBABB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	19	YAASSLQS	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-2	21	QQSYSTSHT	BBAABABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	20	GSGTDF	EEEABB
F	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BABBABAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAABBAEB
F	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
F	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	24	ADEATSTT	LBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	19	RASQSISSYLN	BBABBAEAABB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	17	YAASSLQS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-2	34	QQSYSTSHT	BBAABABBB
G	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	26	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBLBBBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAABABBB
H	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
H	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	21	ADEATSTT	BBAAALBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	14	RASQSISSYLN	BBABBAEABBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	23	YAASSLQS	BLLABBBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-*	-1	QQSYSTSHT	BBAABABBB
I	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
J	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-1	26	KASGGTFSSYAIS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAABABBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
J	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	25	ADEATSTT	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	26	RASQSISSYLN	BBABBAEAABB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	27	YAASSLQS	BLEABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-2	27	QQSYSTSHT	BBAABABBB
K	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
L	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBELBAAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BEBAABBEBB
L	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGgedgdylsdpfyynHGMDV
L	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-*	-1	ADEATSTT	BLAAALBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	18	RASQSISSYLN	BBABBAEAABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	11	YAASSLQS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-*	-1	QQSYSTSHT	BBAABABBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	24	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBBLBBEBB
N	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
N	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	21	ADEATSTT	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L1	11	L1-11-1	12	RASQSISSYLN	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	15	YAASSLQS	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	85.7	L3	9	L3-9-2	26	QQSYSTSHT	BBAABABBB
O	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
P	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	100.0	H1	13	H1-13-*	-1	KASGGTFSSYAIS	BBBEEBAAABBBB
P	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	80.0	H2	10	H2-10-*	-1	GIIPVFGSAN	BBBAAEBBBB
P	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	0.0	H3	22	H3-22-*	-1	AKGGedgdylsdpfyynHGMDV
P	heavy	Homo.sapiens	Hu_IGHV1-69*03	94.1	Hu_IGHV1-69*03	75.0	H4	8	H4-8-1	18	ADEATSTT	BBAAALBB

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