PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7ORA

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	92.3	H1	13	H1-13-1	10	AASGFTFSTYAMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	90.0	H2	10	H2-10-2	6	VLSYDGSNKY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKGGSYAYYYYMDV	BBBBAAABAABBAB
A	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	5	QASQDISNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	9	YDASNLET	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	8	QQYDNlPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	92.3	H1	13	H1-13-1	10	AASGFTFSTYAMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	90.0	H2	10	H2-10-2	6	VLSYDGSNKY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	100.0	H3	14	H3-14-*	-1	AKGGSYAYYYYMDV	BBBBAAABAABBAB
D	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	100.0	Hu_IGHV3-30-3*02	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	5	QASQDISNYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	9	YDASNLET	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	8	QQYDNlPLT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	95.7	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	19	KASGFTFTTSAVQ	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	100.0	H2	10	H2-10-1	8	WIVVGSGNTN	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPHcnSTSCYDAFDI
F	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	87.5	H4	8	H4-8-1	8	RDMSTTTA	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	11	RASQSVSsSYLA	BBABBBBAAABB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	11	YGASSGAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	18	QQYGSSPYT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	92.3	H1	13	H1-13-1	19	KASGFTFTTSAVQ	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	100.0	H2	10	H2-10-1	8	WIVVGSGNTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	100.0	H3	16	H3-16-*	-1	AAPHcnSTSCYDAFDI
H	heavy	Homo.sapiens	Hu_IGHV1-58*01	95.9	Hu_IGHV1-58*01	87.5	H4	8	H4-8-1	8	RDMSTTTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L1	12	L1-12-1	10	RASQSVSsSYLA	BBABBBBAAABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	11	YGASSGAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	18	QQYGSSPYT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	94.2	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024