PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7LJA

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	8	SASSSVSYMH	BBABBBABBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L2	8	L2-8-*	-1	YDTSKLAS	BLEABBBA
D	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	75.0	L3	9	L3-9-cis7-1	11	QQWSNSPPT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	12	GSGTSY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	84.6	H1	13	H1-13-1	10	KVSGYSFTGYIMN	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	60.0	H2	10	H2-10-1	11	LINPNTGYTT	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	0.0	H3	9	H3-9-*	-1	TRGNYVFDY	BBEAABBAB
E	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	100.0	H4	8	H4-8-1	9	VDKSSSTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L1	10	L1-10-1	9	SASSSVSYMH	BBABBBABBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L2	8	L2-8-*	-1	YDTSKLAS	BLLABBBA
F	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	75.0	L3	9	L3-9-cis7-1	18	QQWSNSPPT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-59*01	100.0	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	12	GSGTSY	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	84.6	H1	13	H1-13-1	10	KVSGYSFTGYIMN	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	60.0	H2	10	H2-10-1	8	LINPNTGYTT	BBBAAALBBB
G	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	0.0	H3	9	H3-9-*	-1	TRGNYVFDY	BBEAABBAB
G	heavy	Mus.musculus	Mo_IGHV1S103*01	90.0	Mo_IGHV1S103*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024