PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7CVY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence
D	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H1	13	H1-13-*	-1	VASGFTFSNYWMN
D	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	83.3	H2	12	H2-12-*	-1	QIRlkSDSYATY
D	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H3	12	H3-12-*	-1	TDFYGFGDFFPY
D	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	87.5	H4	8	H4-8-*	-1	RDDSKSNV
E	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	90.9	L1	11	L1-11-*	-1	QASQNVGTNVA
E	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L2	8	L2-8-*	-1	YSASYRYS
E	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	85.7	L3	9	L3-9-*	-1	QQYNSFPLT
E	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L4	6	L4-6-*	-1	GSGTDF
I	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H1	13	H1-13-*	-1	VASGFTFSNYWMN
I	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	83.3	H2	12	H2-12-*	-1	QIRlkSDSYATY
I	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H3	12	H3-12-*	-1	TDFYGFGDFFPY
I	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	87.5	H4	8	H4-8-*	-1	RDDSKSNV
J	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	90.9	L1	11	L1-11-*	-1	QASQNVGTNVA
J	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L2	8	L2-8-*	-1	YSASYRYS
J	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	85.7	L3	9	L3-9-*	-1	QQYNSFPLT
J	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L4	6	L4-6-*	-1	GSGTDF
N	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H1	13	H1-13-*	-1	VASGFTFSNYWMN
N	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	83.3	H2	12	H2-12-*	-1	QIRlkSDSYATY
N	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H3	12	H3-12-*	-1	TDFYGFGDFFPY
N	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	87.5	H4	8	H4-8-*	-1	RDDSKSNV
O	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	90.9	L1	11	L1-11-*	-1	QASQNVGTNVA
O	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L2	8	L2-8-*	-1	YSASYRYS
O	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	85.7	L3	9	L3-9-*	-1	QQYNSFPLT
O	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L4	6	L4-6-*	-1	GSGTDF
S	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H1	13	H1-13-*	-1	VASGFTFSNYWMN
S	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	83.3	H2	12	H2-12-*	-1	QIRlkSDSYATY
S	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	100.0	H3	12	H3-12-*	-1	TDFYGFGDFFPY
S	heavy	Mus.musculus	Mo_IGHV6-3*01	91.5	Mo_IGHV6-3*01	87.5	H4	8	H4-8-*	-1	RDDSKSNV
T	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	90.9	L1	11	L1-11-*	-1	QASQNVGTNVA
T	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L2	8	L2-8-*	-1	YSASYRYS
T	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	85.7	L3	9	L3-9-*	-1	QQYNSFPLT
T	kappa	Mus.musculus	Mo_IGKV6-15*01	91.3	Mo_IGKV6-15*01	100.0	L4	6	L4-6-*	-1	GSGTDF

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024