PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6UBI

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	None	-1.0	H1	13	H1-13-1	13	RLHGDKFGAHYIH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	None	-1.0	H2	10	H2-10-1	13	FFHPGTGDAV	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	Hu_IGHV1-2*06	100.0	H3	15	H3-15-*	-1	ARDKTYSdEATGMDI
A	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	Hu_IGHV1-2*06	87.5	H4	8	H4-8-1	10	RDTSISTG	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	54.5	L1	11	L1-11-1	7	RASQDIRHELV	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	50.0	L2	8	L2-8-1	9	YYGSTLEG	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	85.7	L3	9	L3-9-cis7-1	15	QQLNSFPLT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-2	14	RSGTEF	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	None	-1.0	H1	13	H1-13-*	-1	RLHGDKFGAHYIH	BBBLBBBLABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	None	-1.0	H2	10	H2-10-1	13	FFHPGTGDAV	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	Hu_IGHV1-2*06	100.0	H3	15	H3-15-*	-1	ARDKTYSdEATGMDI
D	heavy	Homo.sapiens	Hu_IGHV1-2*06	82.9	Hu_IGHV1-2*06	87.5	H4	8	H4-8-1	10	RDTSISTG	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	54.5	L1	11	L1-11-1	10	RASQDIRHELV	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	50.0	L2	8	L2-8-1	10	YYGSTLEG	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	85.7	L3	9	L3-9-cis7-1	15	QQLNSFPLT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-9*01	84.1	Hu_IGKV1-9*01	83.3	L4	6	L4-6-2	15	RSGTEF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024