PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6OL7

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	8	AASGFTFSNSAMS	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H2	10	H2-10-2	9	TINNNGGYTH	BBBAALABBB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H3	10	H3-10-2	14	TRQTYWYLDV	BBBBEABBAB
A	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	10	RDNVKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBBBBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	9	YDASNRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	9	QQYEF	BBEAB
B	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	10	GSGTDF	BBEABB
C	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	8	KASGYTFTGYYMH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	11	WINPNSGGTN	BBBAAALBBB
C	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
C	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	7	RDTSISTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	7	KSSQSLlysgnqKNYLA	BBABBABBAAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	13	QQFYFYPWT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	8	AASGFTFSNSAMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H2	10	H2-10-2	10	TINNNGGYTH	BBBAALABBB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H3	10	H3-10-2	13	TRQTYWYLDV	BBBBEABBAB
E	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	11	RDNVKNTL	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBBBBBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	7	YDASNRAT	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	9	QQYEF	BBEAB
F	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	10	GSGTDF	BBEABB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	8	KASGYTFTGYYMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	10	WINPNSGGTN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	6	RDTSISTA	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	7	KASGYTFTGYYMH	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	10	WINPNSGGTN	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
I	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	7	RDTSISTA	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	7	KSSQSLlysgnqKNYLA	BBABBABBAAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	13	QQFYFYPWT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
K	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	8	AASGFTFSNSAMS	BBBLBBAAABBBB
K	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H2	10	H2-10-2	11	TINNNGGYTH	BBBAALABBB
K	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H3	10	H3-10-2	13	TRQTYWYLDV	BBBBEABBAB
K	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	12	RDNVKNTL	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBBBBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	7	YDASNRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	8	QQYEF	BBEAB
L	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	11	GSGTDF	BBEABB
M	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H1	13	H1-13-1	8	KASGYTFTGYYMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H2	10	H2-10-1	9	WINPNSGGTN	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H3	14	H3-14-*	-1	ARGKNSDYNWDFQH	BBBABAABAABBAB
M	heavy	Homo.sapiens	Hu_IGHV1-2*02	100.0	Hu_IGHV1-2*02	100.0	H4	8	H4-8-1	9	RDTSISTA	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L1	11	L1-11-*	-1	RASQSVSSYLA	BBABBBBBBBB
N	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	9	YDASNRAT	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	0.0	L3	5	L3-5-1	9	QQYEF	BBEAB
N	kappa	Homo.sapiens	Hu_IGKV3-11*01	100.0	Hu_IGKV3-11*01	100.0	L4	6	L4-6-2	12	GSGTDF	BBEABB
O	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	7	KSSQSLlysgnqKNYLA	BBABBABBAAALBBBBB
O	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
O	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	14	QQFYFYPWT	BBAABBbBB
O	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	84.6	H1	13	H1-13-1	9	AASGFTFSNSAMS	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H2	10	H2-10-2	11	TINNNGGYTH	BBBAALABBB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	50.0	H3	10	H3-10-2	13	TRQTYWYLDV	BBBBEABBAB
P	heavy	Mus.musculus	Mo_IGHV5-9-3*01	89.0	Mo_IGHV5-9-3*01	87.5	H4	8	H4-8-1	12	RDNVKNTL	BBAAALBB
Q	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	5	KSSQSLlysgnqKNYLA	BBABBABBAAALBBBBB
Q	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
Q	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	13	QQFYFYPWT	BBAABBbBB
Q	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

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