PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6N5E

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
D	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L1	14	L1-14-1	10	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
D	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L2	8	L2-8-*	-1	GGTNNRAP	BLLABBBA
D	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	75.0	L3	9	L3-9-*	-1	ALWFSNHWV	BBBBAABBB
D	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L4	6	L4-6-2	21	LIGDKA	BBEABB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	84.6	H1	13	H1-13-*	-1	AASGFTFSGYDMS	BBBLBABABABBB
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSGGDYIY	BBBAALBEBA
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	15	H3-15-*	-1	TRDSDYyGSRVWFAY
E	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	11	RDNARNTL	BBAAALBB
F	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L1	14	L1-14-1	11	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
F	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L2	8	L2-8-*	-1	GGTNNRAP	BLLABBBA
F	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	75.0	L3	9	L3-9-*	-1	ALWFSNHWV	BBBBAABBB
F	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L4	6	L4-6-2	23	LIGDKA	BBEABB
G	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	84.6	H1	13	H1-13-*	-1	AASGFTFSGYDMS	BBBLBBBAEABBB
G	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSggdyIY
G	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	15	H3-15-*	-1	TRDSDYyGSRVWFAY
G	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	10	RDNARNTL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	84.6	H1	13	H1-13-*	-1	AASGFTFSGYDMS	BBBLBABAEABBB
H	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H2	10	H2-10-*	-1	YISSGGDYIY	BBAALLBLBE
H	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H3	15	H3-15-*	-1	TRDSDYyGSRVWFAY
H	heavy	Mus.musculus	Mo_IGHV5-9-1*02	100.0	Mo_IGHV5-9-1*02	100.0	H4	8	H4-8-1	10	RDNARNTL	BBAAALBB
I	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L1	14	L1-14-1	11	RSSTGAVTtSNYAN	BBAAEBBBAAALBB
I	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L2	8	L2-8-*	-1	GGTNNRAP	BLLABBBA
I	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	75.0	L3	9	L3-9-*	-1	ALWFSNHWV	BBBBAABBB
I	lambda	Mus.musculus	Mo_IGLV1*01	100.0	Mo_IGLV1*01	100.0	L4	6	L4-6-2	23	LIGDKA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024