PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6MPH

#CDRs = 8; #Clusters = 21.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
1	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	CDRLenMismatch	-1.0	H1	14	H1-14-2	17	AVSGASIRtKAWWS	BBBLBBABBBBBBB
1	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	20.0	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBABABBBB
1	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	100.0	H3	10	H3-10-*	-1	AREGPEDFDV	BBBBABBLAB
1	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	75.0	H4	8	H4-8-1	20	KDTSLNQF	BBAAALBB
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLvhsdgKTYLS	BBABBABBAALBBBBB
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	75.0	L2	8	L2-8-*	-1	YQVSNWYS	BLAABBBB
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	57.1	L3	9	L3-9-cis7-1	13	GQGVHLPRT	BBAABBbBB
2	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	66.7	L4	6	L4-6-1	20	GTGTNF	EBEABB
3	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	CDRLenMismatch	-1.0	H1	14	H1-14-2	17	AVSGASIRtKAWWS	BBBLBBABBBBBBB
3	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	20.0	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBABABBBB
3	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	100.0	H3	10	H3-10-*	-1	AREGPEDFDV	BBBBABBLAB
3	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	75.0	H4	8	H4-8-1	20	KDTSLNQF	BBAAALBB
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLvhsdgKTYLS	BBABBABBAALBBBBB
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	75.0	L2	8	L2-8-*	-1	YQVSNWYS	BLAABBBB
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	57.1	L3	9	L3-9-cis7-1	13	GQGVHLPRT	BBAABBbBB
4	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	66.7	L4	6	L4-6-1	20	GTGTNF	EBEABB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	CDRLenMismatch	-1.0	H1	14	H1-14-2	17	AVSGASIRtKAWWS	BBBLBBABBBBBBB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	20.0	H2	10	H2-10-*	-1	YVSGGWDLPN	BBBABABBBB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	100.0	H3	10	H3-10-*	-1	AREGPEDFDV	BBBBABBLAB
H	heavy	Macaca.mulatta	Ma_IGHV4-2*01	84.9	Ma_IGHV4-2*01	75.0	H4	8	H4-8-1	20	KDTSLNQF	BBAAALBB
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	93.8	L1	16	L1-16-1	15	RSSQSLvhsdgKTYLS	BBABBABBAALBBBBB
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	75.0	L2	8	L2-8-*	-1	YQVSNWYS	BLAABBBB
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	57.1	L3	9	L3-9-cis7-1	13	GQGVHLPRT	BBAABBbBB
L	kappa	Macaca.mulatta	Ma_IGKV2S4*01	94.2	Ma_IGKV2S4*01	66.7	L4	6	L4-6-1	20	GTGTNF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBAB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	17	LDKSKNLV	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-1	18	YDTSRRAS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-*	-1	QQFEF	BBLAB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
X	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
X	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBAB
X	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
X	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	17	LDKSKNLV	BBAAALBB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBAB
Y	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
Y	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	17	LDKSKNLV	BBAAALBB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
Z	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
Z	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
a	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
a	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
a	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
a	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
f	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBBAAABBBB
f	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAAALBBB
f	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
f	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
g	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	14	RASGYNFRDYSIH	BBBLBBAAABBBB
g	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAAALBBB
g	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
g	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
h	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
h	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-1	18	YDTSRRAS	BLLABBBB
h	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-*	-1	QQFEF	BBLAB
h	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-1	18	YDTSRRAS	BLLABBBB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-*	-1	QQFEF	BBLAB
i	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

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