PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6JMR

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Mus.musculus	Mo_IGHV2-9-1*01	90.4	Mo_IGHV2-9-1*01	53.8	H1	13	H1-13-1	17	TVSGFPLTXXXXX	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV2-9-1*01	90.4	Mo_IGHV2-9-1*01	0.0	H2	9	H2-9-*	-1	XXXXXXXXX	BBBAALBBB
C	heavy	Mus.musculus	Mo_IGHV2-9-1*01	90.4	Mo_IGHV2-9-1*01	100.0	H3	12	H3-12-*	-1	ARXXXXXXXXXX	BBBBBLALBBAB
C	heavy	Mus.musculus	Mo_IGHV2-9-1*01	90.4	Mo_IGHV2-9-1*01	100.0	H4	8	H4-8-1	10	KDNSKSQV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	0.0	L1	17	L1-17-*	-1	XXXXXxxxxxxXXXXXX	BBABBABBAAALBBBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	12.5	L2	8	L2-8-1	16	YXXXXXXX	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	0.0	L3	9	L3-9-*	-1	XXXXXXXXX	BBABBABBB
D	kappa	Mus.musculus	Mo_IGKV8-30*01	98.6	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV2-4*02	93.2	Mo_IGHV2-4*02	84.6	H1	13	H1-13-1	24	TVSGFSLTTYGIH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV2-4*02	93.2	Mo_IGHV2-4*02	66.7	H2	9	H2-9-1	21	VIWSNGRID	BBBAALBBB
E	heavy	Mus.musculus	Mo_IGHV2-4*02	93.2	Mo_IGHV2-4*02	100.0	H3	13	H3-13-*	-1	ARNVYDSLTWFTY	BBBBAABABBABB
E	heavy	Mus.musculus	Mo_IGHV2-4*02	93.2	Mo_IGHV2-4*02	100.0	H4	8	H4-8-1	22	KDNSKSQV	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L1	17	L1-17-*	-1	KSSQSLlyssnqKNYLA	BBABBABBAABABBBBB
F	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	87.5	L2	8	L2-8-*	-1	FWASTRES	BLLBBBBB
F	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	85.7	L3	8	L3-8-*	-1	QQYTSYPT	BBAABABB
F	kappa	Mus.musculus	Mo_IGKV8-30*01	92.8	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024