PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6DZW

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-82*01	94.5	Mo_IGHV1-82*01	84.6	H1	13	H1-13-1	16	KASGYRFSYSWMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-82*01	94.5	Mo_IGHV1-82*01	90.0	H2	10	H2-10-3	17	RIYPGDGDTK	BBBBLALBBB
H	heavy	Mus.musculus	Mo_IGHV1-82*01	94.5	Mo_IGHV1-82*01	100.0	H3	14	H3-14-*	-1	ARSAYGSEGFAMDY	BBBBBAAALLBBAB
H	heavy	Mus.musculus	Mo_IGHV1-82*01	94.5	Mo_IGHV1-82*01	87.5	H4	8	H4-8-1	18	ADKSSSTV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	97.1	Mo_IGKV3-2*01	93.3	L1	15	L1-15-*	-1	RASESVDNYgisfLN	BBABlABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	97.1	Mo_IGKV3-2*01	100.0	L2	8	L2-8-*	-1	YAASNQGS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	97.1	Mo_IGKV3-2*01	57.1	L3	9	L3-9-*	-1	QQTKGVSWT	BBABBaBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	97.1	Mo_IGKV3-2*01	83.3	L4	6	L4-6-1	22	GSGTYF	EBEABB
V	heavy	Mus.musculus	Mo_IGHV1-26*01	98.6	Mo_IGHV1-26*01	100.0	H1	13	H1-13-1	15	KASGYTFTDYYMN	BBBLBBAAABBBB
V	heavy	Mus.musculus	Mo_IGHV1-26*01	98.6	Mo_IGHV1-26*01	90.0	H2	10	H2-10-1	13	NINPNNGGTS	BBBAAALBBB
V	heavy	Mus.musculus	Mo_IGHV1-26*01	98.6	Mo_IGHV1-26*01	50.0	H3	12	H3-12-*	-1	TRSPVRPYYFDY	BBBBBLbBBBAB
V	heavy	Mus.musculus	Mo_IGHV1-26*01	98.6	Mo_IGHV1-26*01	87.5	H4	8	H4-8-1	13	VDKSSTTA	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV6-17*01	100.0	Mo_IGKV6-17*01	100.0	L1	11	L1-11-*	-1	KASQDVSTAVA	BBABBBAABBB
V	kappa	Mus.musculus	Mo_IGKV6-17*01	100.0	Mo_IGKV6-17*01	100.0	L2	8	L2-8-1	27	YSASYRYT	BLLABBBB
V	kappa	Mus.musculus	Mo_IGKV6-17*01	100.0	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	13	QQHYSIPRT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV6-17*01	100.0	Mo_IGKV6-17*01	100.0	L4	6	L4-6-1	27	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024