PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6CUE

#CDRs = 8; #Clusters = 19.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H1	13	H1-13-1	20	KASGYTFTDYEMH	BBBLBBAAABBBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80.0	H2	10	H2-10-1	15	AIVPETGFTA	BBBAAALBBB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	50.0	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBBBLBBBAB
3	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	13	ADKSSSTA	BBAAALBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	17	RSSQSIvysngNTYLE	BBABBABBAALBBBBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BEAABBBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	15	FQGSHVPYT	BBAABBbBB
4	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB
5	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
5	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
5	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	18	LDKSKNLV	BBAAALBB
6	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
6	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
6	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
6	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
7	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	12	RASGYNFRDYSIH	BBBLBBAAABBBB
7	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	11	WIKPLWGAVS	BBBAAALBBB
7	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
7	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-4	31	YDTSRRAS	BLAABBBB
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-1	33	QQFEF	BBAAB
8	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H1	13	H1-13-1	21	KASGYTFTDYEMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80.0	H2	10	H2-10-1	16	AIVPETGFTA	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	50.0	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBBBLBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	17	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	21	RSSQSIvysngNTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BBAABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	14	FQGSHVPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
M	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	15	LDKSKNLV	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
N	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	13	RASGYNFRDYSIH	BBBLBBAAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	11	WIKPLWGAVS	BBBAAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
Q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-4	31	YDTSRRAS	BLAABBBB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-1	33	QQFEF	BBAAB
R	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H1	13	H1-13-1	20	KASGYTFTDYEMH	BBBLBBAAABBBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	80.0	H2	10	H2-10-1	15	AIVPETGFTA	BBBAAALBBB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	50.0	H3	11	H3-11-*	-1	SRLRLYWYFDV	BBBBBLBBBAB
h	heavy	Mus.musculus	Mo_IGHV1-15*01	95.9	Mo_IGHV1-15*01	100.0	H4	8	H4-8-1	17	ADKSSSTA	BBAAALBB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	20	RSSQSIvysngNTYLE	BBABBABBAALBBBBB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	BEAABBBB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	17	FQGSHVPYT	BBAABBbBB
l	kappa	Mus.musculus	Mo_IGKV1-117*01	94.1	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
m	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	53.8	H1	13	H1-13-*	-1	NVSGTLVRDNYWS	BBBEBBAAABBBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	55.6	H2	9	H2-9-*	-1	YVHDSGDTN	BBBBLLBBB
m	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H3	26	H3-26-*	-1	ATTKHGRriygvvafkewfTYFYMDV
m	heavy	Homo.sapiens	Hu_IGHV4-59*02	79.5	Hu_IGHV4-59*02	50.0	H4	8	H4-8-1	16	LDKSKNLV	BBAAALBB
n	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	45.5	L1	11	L1-11-*	-1	GEESLGSRSVI	EBBBABBBBBB
n	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	62.5	L2	8	L2-8-*	-1	YNNNDRPS	ABAABBBB
n	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	33.3	L3	12	L3-12-*	-1	HIWDSRRpTNWV
n	lambda	Homo.sapiens	Hu_IGLV3-21*02	76.9	Hu_IGLV3-21*02	0.0	L4	9	L4-9-*	-1	pgsTFGTTA
q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	69.2	H1	13	H1-13-1	11	RASGYNFRDYSIH	BBBLBBAAABBBB
q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Ra_IGHV1-38*01	30.0	H2	10	H2-10-1	12	WIKPLWGAVS	BBBAAALBBB
q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	50.0	H3	16	H3-16-*	-1	VRRGSCDYCGDFpwQY
q	heavy	Homo.sapiens	Hu_IGHV1-18*03	71.1	Hu_IGHV1-18*03	0.0	H4	15	H4-15-*	-1	RQLSQDpddpdwgVA
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	40.0	L1	10	L1-10-*	-1	KASQGGNAMT	BBABBLBBBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Ra_IGKV4S10*01	75.0	L2	8	L2-8-4	31	YDTSRRAS	BLAABBBB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	0.0	L3	5	L3-5-1	34	QQFEF	BBAAB
r	kappa	Homo.sapiens	Hu_IGKV3-20*01	79.7	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	17	GSGTDF	EBEABB

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