PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 6A3W

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	84.6	H1	13	H1-13-1	8	KGSGYSFSTYWIS	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	70.0	H2	10	H2-10-1	11	KIYPGDSYTN	BBBAAALBBB
A	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H3	9	H3-9-*	-1	ARGYGIFDY	BBEAABBAB
A	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H4	8	H4-8-1	7	ADKSISTA	BBAAALBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	4	SGDNIGDQYAH	BBBLAAABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	75.0	L2	8	L2-8-1	9	YQDKNRPS	BLLABBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	0.0	L3	11	L3-11-*	-1	ATYTGFGSLAV	BBBBABLLBBB
B	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	15	NSGNTA	BBEABB
D	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	84.6	H1	13	H1-13-1	8	KGSGYSFSTYWIS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	70.0	H2	10	H2-10-1	9	KIYPGDSYTN	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H3	9	H3-9-*	-1	ARGYGIFDY	BBEAABBAB
D	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H4	8	H4-8-1	8	ADKSISTA	BBAAALBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	5	SGDNIGDQYAH	BBBLAAABBBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	75.0	L2	8	L2-8-1	12	YQDKNRPS	BLLABBBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	0.0	L3	11	L3-11-*	-1	ATYTGFGSLAV	BBBBABLLBBB
E	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	12	NSGNTA	BBEABB
G	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	84.6	H1	13	H1-13-1	8	KGSGYSFSTYWIS	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	70.0	H2	10	H2-10-1	9	KIYPGDSYTN	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H3	9	H3-9-*	-1	ARGYGIFDY	BBEAABBAB
G	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H4	8	H4-8-1	7	ADKSISTA	BBAAALBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	3	SGDNIGDQYAH	BBBLAAABBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	75.0	L2	8	L2-8-1	10	YQDKNRPS	BLLABBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	0.0	L3	11	L3-11-*	-1	ATYTGFGSLAV	BBBBABLLBBB
H	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	14	NSGNTA	BBEABB
J	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	84.6	H1	13	H1-13-1	7	KGSGYSFSTYWIS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	70.0	H2	10	H2-10-1	10	KIYPGDSYTN	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H3	9	H3-9-*	-1	ARGYGIFDY	BBEAABBAB
J	heavy	Homo.sapiens	Hu_IGHV5-10-1*04	100.0	Hu_IGHV5-10-1*04	100.0	H4	8	H4-8-1	6	ADKSISTA	BBAAALBB
K	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	63.6	L1	11	L1-11-3	6	SGDNIGDQYAH	BBBLAAABBBB
K	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	75.0	L2	8	L2-8-1	9	YQDKNRPS	BLLABBBB
K	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	0.0	L3	11	L3-11-*	-1	ATYTGFGSLAV	BBBBABLLBBB
K	lambda	Homo.sapiens	Hu_IGLV3-1*01	100.0	Hu_IGLV3-1*01	100.0	L4	6	L4-6-2	14	NSGNTA	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024