PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5XJ3

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	92.3	H1	13	H1-13-1	13	AASGFTFSSYTMH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	80.0	H2	10	H2-10-2	13	FISYDGNNKY	BBBAALABBB
A	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H3	11	H3-11-1	25	ARTGWLGPFDY	BBBBAAEBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H4	8	H4-8-1	11	RDNSKNTL	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	22	RASQSVgSSYLA	BBABBBBAAABB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	14	YGAFSRAT	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	8	QQYGSSPWT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	17	GSGTDF	EBAABB
D	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	92.3	H1	13	H1-13-1	13	AASGFTFSSYTMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	80.0	H2	10	H2-10-2	12	FISYDGNNKY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H3	11	H3-11-1	24	ARTGWLGPFDY	BBBBAAEBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	20	RASQSVgSSYLA	BBABBBBAAABB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	12	YGAFSRAT	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	7	QQYGSSPWT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	16	GSGTDF	EBAABB
G	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	92.3	H1	13	H1-13-1	12	AASGFTFSSYTMH	BBBLBBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	80.0	H2	10	H2-10-2	13	FISYDGNNKY	BBBAALABBB
G	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H3	11	H3-11-1	24	ARTGWLGPFDY	BBBBAAEBBAB
G	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-*	-1	RASQSVgSSYLA	BBABBBBBAABB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	14	YGAFSRAT	BLLABBBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	6	QQYGSSPWT	BBAABBbBB
H	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	18	GSGTDF	EBAABB
J	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	92.3	H1	13	H1-13-1	13	AASGFTFSSYTMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	80.0	H2	10	H2-10-2	13	FISYDGNNKY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H3	11	H3-11-1	23	ARTGWLGPFDY	BBBBAAEBBAB
J	heavy	Homo.sapiens	Hu_IGHV3-30*03	97.3	Hu_IGHV3-30*03	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	91.7	L1	12	L1-12-1	21	RASQSVgSSYLA	BBABBBBAAABB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	87.5	L2	8	L2-8-1	12	YGAFSRAT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L3	9	L3-9-cis7-1	7	QQYGSSPWT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	100.0	Hu_IGKV3-20*01	100.0	L4	6	L4-6-3	19	GSGTDF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024