PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VYF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L1	11	L1-11-1	6	RASQSISSWLA	BBABBAEABBB
A	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L2	8	L2-8-1	4	YKASSLES	BLLABBBB
A	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	85.7	L3	9	L3-9-cis7-1	9	QQYNSYPLT	BBAABBbBB
A	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	50.0	H2	10	H2-10-2	9	AISGRGYNAD	BBBAALABBB
B	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H3	8	H3-8-2	17	AKLEYFDY	BBEAALAB
B	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
H	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	50.0	H2	10	H2-10-2	9	AISGRGYNAD	BBBAALABBB
H	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H3	8	H3-8-2	18	AKLEYFDY	BBEAALAB
H	heavy	Mus.musculus	Hu_IGHV3-23*04	100.0	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L1	11	L1-11-1	6	RASQSISSWLA	BBABBAEABBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	100.0	L2	8	L2-8-1	4	YKASSLES	BLLABBBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	85.7	L3	9	L3-9-cis7-1	9	QQYNSYPLT	BBAABBbBB
L	kappa	Mus.musculus	Hu_IGKV1-5*03	95.7	Hu_IGKV1-5*03	83.3	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024