PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5VCN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	90.9	L1	11	L1-11-2	7	RASQDITNYLN	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	100.0	L2	8	L2-8-1	10	YYTSRLHS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	85.7	L3	8	L3-8-3	11	QQGKTLPT	BBAABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	100.0	L4	6	L4-6-1	8	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	16	TVSGFSLTGYGVN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	77.8	H2	9	H2-9-1	13	MIWGDGRID	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	100.0	H3	14	H3-14-*	-1	ARAYQRYDYYAMDY	BBBBABAABBBBAB
D	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	75.0	H4	8	H4-8-1	16	KDNSQSQI	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	90.9	L1	11	L1-11-2	7	RASQDITNYLN	BBABBALLBBB
E	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	100.0	L2	8	L2-8-1	10	YYTSRLHS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	85.7	L3	8	L3-8-3	10	QQGKTLPT	BBAABBBB
E	kappa	Mus.musculus	Mo_IGKV10-96*02	100.0	Mo_IGKV10-96*02	100.0	L4	6	L4-6-1	9	GSGTDY	EBEABB
F	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	100.0	H1	13	H1-13-1	16	TVSGFSLTGYGVN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	77.8	H2	9	H2-9-1	13	MIWGDGRID	BBBAALBBB
F	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	100.0	H3	14	H3-14-*	-1	ARAYQRYDYYAMDY	BBBBABAABBBBAB
F	heavy	Mus.musculus	Mo_IGHV2-6-7*01	90.4	Mo_IGHV2-6-7*01	75.0	H4	8	H4-8-1	16	KDNSQSQI	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024