PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5V8L

#CDRs = 8; #Clusters = 15.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBBABBAAABBBB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-1	17	WINPKTGQPN	BBBAAALBBB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBABAALBBAB
G	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBBABBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-1	15	WINPKTGQPN	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBABAALBBAB
H	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
I	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	46.2	H1	13	H1-13-*	-1	EASGYNIRDYFIH	BBBABBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	60.0	H2	10	H2-10-1	16	WINPKTGQPN	BBBAAALBBB
I	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	100.0	H3	12	H3-12-*	-1	ARQRSDYWDFDV	BBBABAALBBAB
I	heavy	Homo.sapiens	Hu_IGHV1-2*07	64.9	Hu_IGHV1-2*07	0.0	H4	12	H4-12-*	-1	RHASwdfdTYSF
J	heavy	Homo.sapiens	Hu_IGHV1-8*03	82.2	Hu_IGHV1-8*03	46.2	H1	13	H1-13-*	-1	KASGNSFSNHDVH	BBBLLAAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-8*03	82.2	Hu_IGHV1-8*03	40.0	H2	10	H2-10-2	17	WMSHEGDKTG	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV1-8*03	82.2	Hu_IGHV1-8*03	0.0	H3	33	H3-33-*	-1	LTGSKHRLRDYFlyneygpnyeewgdylatlDV
J	heavy	Homo.sapiens	Hu_IGHV1-8*03	82.2	Hu_IGHV1-8*03	37.5	H4	8	H4-8-*	-1	RDSGASTV	BBBLLABB
K	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
K	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-1	22	YDGSKLER	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	45	QVYEF	BBAAB
K	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	20	RWGQEY	BBEABB
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-*	-1	YDGSKLER	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	44	QVYEF	BBAAB
L	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	19	RWGQEY	BBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	0.0	L1	7	L1-7-*	-1	QANGYLN
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	None	37.5	L2	8	L2-8-1	23	YDGSKLER	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	0.0	L3	5	L3-5-1	44	QVYEF	BBAAB
M	kappa	Homo.sapiens	Hu_IGKV1-17*02	81.2	Hu_IGKV1-17*02	33.3	L4	6	L4-6-2	22	RWGQEY	BBEABB
N	kappa	Homo.sapiens	Hu_IGKV2-28*01	82.6	Hu_IGKV2-28*01	56.2	L1	16	L1-16-1	15	KCSHSLQhstgaNYLA	BBABBABBAALBBBBB
N	kappa	Homo.sapiens	Hu_IGKV2-28*01	82.6	Hu_IGKV2-28*01	50.0	L2	8	L2-8-1	23	HLATHRAS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV2-28*01	82.6	Hu_IGKV2-28*01	57.1	L3	9	L3-9-cis7-1	13	MQGLHSPWT	BBAABBbBB
N	kappa	Homo.sapiens	Hu_IGKV2-28*01	82.6	Hu_IGKV2-28*01	100.0	L4	6	L4-6-1	16	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024