PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5UDD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	15	QASGGLLEDYIIN	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
J	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	16	QASGGLLEDYIIN	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
K	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
L	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	15	QASGGLLEDYIIN	BBBLBBAAABBBB
L	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
L	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
L	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	18	ADESTDTA	BBAAALBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	16	QASGGLLEDYIIN	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
M	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
N	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	16	QASGGLLEDYIIN	BBBLBBAAABBBB
N	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
N	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
N	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	46.2	H1	13	H1-13-1	16	QASGGLLEDYIIN	BBBLBBAAABBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	70.0	H2	10	H2-10-1	16	GIIPVLGTVH	BBBAAALBBB
O	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	50.0	H3	19	H3-19-*	-1	ATETAlvvseTYLPHYFDN
O	heavy	Homo.sapiens	Hu_IGHV1-69*16	90.4	Hu_IGHV1-69*16	75.0	H4	8	H4-8-1	17	ADESTDTA	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
P	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPLT	BBAABBbBB
P	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
Q	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
Q	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
Q	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	8	QQYDNlPLT	BBAABBbBB
Q	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
R	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	5	QASQDIVNYLN	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPLT	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
S	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
S	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
S	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPLT	BBAABBbBB
S	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
T	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
T	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPLT	BBAABBbBB
T	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
U	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	90.9	L1	11	L1-11-1	6	QASQDIVNYLN	BBABBAEABBB
U	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	87.5	L2	8	L2-8-1	5	YVASNLET	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPLT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV1-33*01	94.2	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

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