PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5TBD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	12	TASGFNIKDDYMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	9	RIDPANGNTQ	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H3	7	H3-7-*	-1	ARGGLLR	BBBLLAB
A	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	87.5	L1	16	L1-16-1	7	KSSQSLlhsngKTYLN	BBABBABBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	7	YLVSKLDS	BLEABBBB
B	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	10	WQGTHFPIT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	12	TASGFNIKDDYMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	6	RIDPANGNTQ	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H3	7	H3-7-*	-1	ARGGLLR	BBBLLAB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	9	ADTSSNTA	BBAAALBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	12	TASGFNIKDDYMH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	10	RIDPANGNTQ	BBBAAALBBB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H3	7	H3-7-*	-1	ARGGLLR	BBBLLAB
E	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	5	ADTSSNTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	87.5	L1	16	L1-16-1	8	KSSQSLlhsngKTYLN	BBABBABBAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	5	YLVSKLDS	BLLABBBB
F	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	8	WQGTHFPIT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	87.5	L1	16	L1-16-1	8	KSSQSLlhsngKTYLN	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	5	YLVSKLDS	BLEABBBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	11	WQGTHFPIT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	92.3	H1	13	H1-13-1	11	TASGFNIKDDYMH	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	11	RIDPANGNTQ	BBBAAALBBB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H3	7	H3-7-*	-1	ARGGLLR	BBBLLAB
J	heavy	Mus.musculus	Mo_IGHV14-3*02	93.2	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	9	ADTSSNTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	87.5	L1	16	L1-16-1	9	KSSQSLlhsngKTYLN	BBABBABBAALBBBBB
K	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L2	8	L2-8-1	7	YLVSKLDS	BLEABBBB
K	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L3	9	L3-9-cis7-1	12	WQGTHFPIT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV1-135*01	98.6	Mo_IGKV1-135*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024