PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5MYX

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	6	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	87.5	L2	8	L2-8-1	7	YVVSKLDS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L3	9	L3-9-cis7-1	9	VQGTHFPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	69.2	H1	13	H1-13-1	7	KASGYIFNNYWIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H2	10	H2-10-1	8	QIYPGDGDTN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H3	8	H3-8-*	-1	AREGYIVY	BBBEABBB
B	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	10	ADKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	7	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	87.5	L2	8	L2-8-1	6	YVVSKLDS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L3	9	L3-9-cis7-1	9	VQGTHFPFT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-133*01	98.6	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	69.2	H1	13	H1-13-1	8	KASGYIFNNYWIN	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H2	10	H2-10-1	11	QIYPGDGDTN	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H3	8	H3-8-*	-1	AREGYIVY	BBBEABBB
D	heavy	Mus.musculus	Mo_IGHV1-80*01	95.9	Mo_IGHV1-80*01	100.0	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on July 15, 2024