PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5MV4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
A	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
C	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
F	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
L	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
O	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
P	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
R	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
S	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	83.3	H2	12	H2-12-1	6	EIRNKvnNHATN	BBBBAAALLBBB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	50.0	H3	7	H3-7-*	-1	TGLTFDY	BBLEAAB
U	heavy	Mus.musculus	Mo_IGHV6-6*01	93.2	Mo_IGHV6-6*01	75.0	H4	8	H4-8-1	3	RDDSRSVV	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	93.3	L1	15	L1-15-1	8	RASESVDNYgissMN	BBABBABBLLBBBBB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	87.5	L2	8	L2-8-1	6	YAASKQGS	BLLABBBB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	85.7	L3	9	L3-9-cis7-1	13	QQSKGVPYT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV3-2*01	92.8	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

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