PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5JW4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
M	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
M	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
M	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
M	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	5	YAASSRGS	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	11	QQSRT	BBEAB
N	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	7	GSGTDF	BBEABB
O	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
O	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
O	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
O	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	5	YAASSRGS	BLLABBBB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	11	QQSRT	BBEAB
P	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	8	GSGTDF	BBEABB
Q	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
Q	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
Q	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	3	YAASSRGS	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	14	QQSRT	BBEAB
R	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	8	GSGTDF	BBEABB
S	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
S	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
S	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
S	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	4	YAASSRGS	BLLABBBB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	12	QQSRT	BBEAB
T	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	8	GSGTDF	BBEABB
U	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
U	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
U	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
U	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	5	YAASSRGS	BLLABBBB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	11	QQSRT	BBEAB
V	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	7	GSGTDF	BBEABB
W	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	80.0	H1	15	H1-15-2	12	AISGDSVSSYnaVWN	BBBLBBAABAABBBB
W	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	90.9	H2	11	H2-11-1	13	RTYYRSGwYND	BBBBBLEBBBB
W	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H3	18	H3-18-*	-1	ARSGHITvfgvNVDAFDM
W	heavy	Homo.sapiens	Hu_IGHV6-1*01	98.6	Hu_IGHV6-1*01	100.0	H4	8	H4-8-1	20	PDTSKNQF	BBAAALBB
X	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	63.6	L1	11	L1-11-*	-1	RTSQSLSSYTH	BBABBBAAABB
X	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	75.0	L2	8	L2-8-1	5	YAASSRGS	BLLABBBB
X	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	0.0	L3	5	L3-5-1	11	QQSRT	BBEAB
X	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-2	9	GSGTDF	BBEABB

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